Sequence Similarity Clusters for the Entities in PDB 3U36

Entity #1 | Chains: A,C,E,H
PG9 Fab heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8213
95 % 4 5 6785 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 4 5 6774
70 % 2050 2478 2
50 % 4229 5107 1
40 % 4751 5756 1
30 % 5930 7175 1
Entity #2 | Chains: B,D,F,L
PG9 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5898
95 % 4 6 6124 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 73 86 247
70 % 2082 2519 1
50 % 4230 5107 1
40 % 4752 5756 1
30 % 5931 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures