Sequence Similarity Clusters for the Entities in PDB 3U36

Entity #1 | Chains: A,C,E,H
PG9 Fab heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20910
95 % 4 5 6494 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 4 5 6480
70 % 1977 2376 2
50 % 4096 4913 1
40 % 4096 4913 1
30 % 4843 5780 1
Entity #2 | Chains: B,D,F,L
PG9 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7418
95 % 4 6 5940 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 76 89 233
70 % 2019 2426 1
50 % 4097 4913 1
40 % 4097 4913 1
30 % 4844 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures