Sequence Similarity Clusters for the Entities in PDB 3U36

Entity #1 | Chains: A,C,E,H
PG9 Fab heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19754
95 % 4 5 6157 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.9
PDBFlex
90 % 4 5 6139
70 % 1846 2201 1
50 % 3816 4545 1
40 % 3816 4545 1
30 % 4507 5350 1
Entity #2 | Chains: B,D,F,L
PG9 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7032
95 % 4 6 5612 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.6
PDBFlex
90 % 58 71 262
70 % 315 398 10
50 % 3817 4545 1
40 % 3817 4545 1
30 % 4508 5350 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.