Sequence Similarity Clusters for the Entities in PDB 3U36

Entity #1 | Chains: A,C,E,H
PG9 Fab heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20403
95 % 4 5 6369 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 4 5 6354
70 % 1898 2282 2
50 % 3930 4717 1
40 % 3930 4717 1
30 % 4666 5571 1
Entity #2 | Chains: B,D,F,L
PG9 Fab light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7245
95 % 4 6 5818 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 67 80 247
70 % 1937 2329 1
50 % 3931 4717 1
40 % 3931 4717 1
30 % 4667 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.