Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15017
95 % 1 5 6304 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.7
PDBFlex
90 % 1 5 6287
70 % 200 2244 2
50 % 409 4633 1
40 % 409 4633 1
30 % 442 5461 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7177
95 % 1 6 5758 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.5
PDBFlex
90 % 4 75 259
70 % 197 2287 1
50 % 410 4633 1
40 % 410 4633 1
30 % 443 5461 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28933
95 % 1 3 14724 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.3
PDBFlex
90 % 1 3 14455
70 % 1 5 9100
50 % 1 5 8223
40 % 1 5 7536
30 % 1 5 6651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.