Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15353
95 % 1 5 6438 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 5 6422
70 % 214 2334 2
50 % 439 4827 1
40 % 439 4827 1
30 % 474 5688 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7331
95 % 1 6 5883 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 7 86 243
70 % 212 2385 1
50 % 440 4827 1
40 % 440 4827 1
30 % 475 5688 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29497
95 % 1 3 15002 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.8
PDBFlex
90 % 1 3 14732
70 % 1 5 9238
50 % 1 5 8359
40 % 1 5 7662
30 % 1 5 6754

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures