Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15770
95 % 1 5 6582 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 5 6576
70 % 227 2424 2
50 % 466 5011 1
40 % 466 5011 1
30 % 530 5941 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7529
95 % 1 6 6018 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 7 93 227
70 % 225 2474 1
50 % 467 5011 1
40 % 467 5011 1
30 % 531 5941 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30160
95 % 1 3 15364 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.8
PDBFlex
90 % 1 3 15083
70 % 1 5 9455
50 % 1 5 8552
40 % 1 5 7836
30 % 1 5 6903

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures