Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18751
95 % 1 4 6387
90 % 1 4 6381
70 % 176 2036 1
50 % 361 4210 1
40 % 361 4211 1
30 % 388 4962 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8359
95 % 1 5 5841
90 % 2 52 331
70 % 29 355 10
50 % 362 4210 1
40 % 362 4211 1
30 % 389 4962 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 26876
95 % 1 3 13680
90 % 1 3 13438
70 % 1 4 9270
50 % 1 4 8433
40 % 1 4 7732
30 % 1 4 6826

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.