Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14809
95 % 1 5 6230 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 5 6212
70 % 198 2223 2
50 % 405 4589 1
40 % 405 4589 1
30 % 436 5394 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7091
95 % 1 6 5670 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.7
PDBFlex
90 % 4 73 262
70 % 195 2265 1
50 % 406 4589 1
40 % 406 4589 1
30 % 437 5394 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28465
95 % 1 3 14509 Flexibility: Medium
Max RMSD: 4.2, Avg RMSD: 3.3
PDBFlex
90 % 1 3 14235
70 % 1 5 8964
50 % 1 5 8106
40 % 1 5 7438
30 % 1 5 6563

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.