Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17924
95 % 1 4 6102
90 % 1 4 6096
70 % 166 1912 1
50 % 338 3940 1
40 % 338 3941 1
30 % 365 4669 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 7941
95 % 1 5 5585
90 % 2 52 317
70 % 29 335 11
50 % 339 3940 1
40 % 339 3941 1
30 % 366 4669 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25731
95 % 1 3 13115
90 % 1 3 12877
70 % 1 4 8884
50 % 1 4 8103
40 % 1 4 7450
30 % 1 4 6611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.