Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 19099
95 % 1 4 6509
90 % 1 4 6496
70 % 186 2096 1
50 % 381 4337 1
40 % 381 4337 1
30 % 408 5109 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8524
95 % 1 5 5968
90 % 2 64 278
70 % 32 377 9
50 % 382 4337 1
40 % 382 4337 1
30 % 409 5109 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 27376
95 % 1 3 13918
90 % 1 3 13666
70 % 1 4 9416
50 % 1 4 8568
40 % 1 4 7853
30 % 1 4 6932

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.