Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8213
95 % 1 5 6785 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 5 6774
70 % 231 2478 2
50 % 474 5107 1
40 % 588 5756 1
30 % 713 7175 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 5898
95 % 1 6 6124 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 6 86 247
70 % 229 2519 1
50 % 475 5107 1
40 % 589 5756 1
30 % 714 7175 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16374
95 % 1 3 15207 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.8
PDBFlex
90 % 1 3 14902
70 % 1 5 9354
50 % 1 5 8495
40 % 1 5 7738
30 % 1 5 6702

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures