Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14551
95 % 1 5 6088 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.9
PDBFlex
90 % 1 5 6072
70 % 193 2172 1
50 % 395 4489 1
40 % 395 4489 1
30 % 426 5290 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 6939
95 % 1 6 5542 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.6
PDBFlex
90 % 3 69 265
70 % 33 394 9
50 % 396 4489 1
40 % 396 4489 1
30 % 427 5290 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28022
95 % 1 3 14277 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.8
PDBFlex
90 % 1 3 14012
70 % 1 5 8806
50 % 1 5 7971
40 % 1 5 7311
30 % 1 5 6446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.