Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15225
95 % 1 5 6397 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 1 5 6380
70 % 208 2311 2
50 % 427 4781 1
40 % 427 4781 1
30 % 460 5635 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7279
95 % 1 6 5841 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.4
PDBFlex
90 % 7 86 241
70 % 206 2362 1
50 % 428 4781 1
40 % 428 4781 1
30 % 461 5635 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29294
95 % 1 3 14906 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.8
PDBFlex
90 % 1 3 14637
70 % 1 5 9188
50 % 1 5 8313
40 % 1 5 7621
30 % 1 5 6722

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures