Sequence Similarity Clusters for the Entities in PDB 3U2S

Entity #1 | Chains: A,H
PG9 heavy chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18053
95 % 1 4 6144
90 % 1 4 6135
70 % 169 1932 1
50 % 344 3985 1
40 % 344 3986 1
30 % 371 4715 1
Entity #2 | Chains: B,L
PG9 light chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 8005
95 % 1 5 5618
90 % 2 52 319
70 % 29 338 11
50 % 345 3985 1
40 % 345 3986 1
30 % 372 4715 1
Entity #3 | Chains: C,G
Envelope glycoprotein gp120 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25903
95 % 1 3 13214
90 % 1 3 12979
70 % 1 4 8951
50 % 1 4 8158
40 % 1 4 7502
30 % 1 4 6649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.