Sequence Similarity Clusters for the Entities in PDB 3U0N

Entity #1 | Chains: A
mRuby protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28031
95 % 2 3 23368 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 22647
70 % 5 39 372
50 % 30 194 20
40 % 32 200 27
30 % 148 522 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3E5T 1 A Red fluorescent protein eqFP611 6118
2 3PIB 1 A, B, C, D eqFP578 fluorescent protein 6118
3 3U0L 1 A mRuby 6118
4 3NT3 1 A, B, C, D LSSmKate2 red fluorescent protein 32630
5 3U0N 1 A mRuby 6118
6 3IP2 1 A Neptune red fluorescent protein 6118
7 4EDS 1 A, B far-red fluorescent protein eqFP650 6118
8 3PJ5 1 A, B Red fluorescent protein eqFP578 6118
9 3U0M 1 A mRuby 6118
10 4OJ0 1 A, B, C, D Fluorescent protein FP480 6118
11 4KPI 1 A Reversibly photoswitchable red fluorescent protein rsTagRFP 32630
12 3E5W 1 A, B, C, D Red fluorescent protein eqFP611 6118
13 3PJB 1 A, B Red fluorescent protein eqFP578 6118
14 3BXA 1 A, B Far-red fluorescent protein mKate 6118
15 3U8A 1 A, B, C, D Fluorescent protein rsTagRFP 32630
16 3SVS 1 A, B, C, D, E, F, G, H mKate S158A/S143C 32630
17 4EDO 1 A, B far-red fluorescent protein eqFP650 6118
18 3SVN 1 A, B, C, D mKate 32630
19 3BX9 1 A, B Far-red fluorescent protein mKate 6118
20 3PJ7 1 A, B, C, D Red fluorescent protein eqFP578 6118
21 3SVR 1 A, B, C, D mkate S158A/S143C 32630
22 3SVO 1 A, B, C, D mKate S158A/S143C 32630
23 5JVA 1 A, B, C, D TagRFP-T 32630
24 3H1O 1 A, B Fluorescent protein FP480 6118
25 3NT9 1 A, B, C, D LSSmKate1 red fluorescent protein 32630
26 3U8C 1 A, B, C, D Fluorescent protein rsTagRFP 32630
27 3M22 1 A, B, C, D TagRFP 32630
28 3M24 1 A, B, C, D TagBFP 32630
29 3E5V 1 A Red fluorescent protein eqFP611 6118
30 1UIS 1 A, B red fluorescent protein FP611 6118
31 4KGE 1 A, B TagRFP675, red fluorescent protein 32630
32 4KGF 1 A, B TagRFP675, red fluorescent protein 32630
33 4OQW 1 A, B, C, D, E, F, G, H Fluorescent protein FP480 6118
34 5BQL 1 A, B, C, D Fluorescent protein cyOFP 562
35 3BXB 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
36 4NWS 1 A, B fluorescent protein 32630
37 3H1R 1 A Fluorescent protein FP480 6118
38 3SVU 1 A, B, C, D mkate S143C 32630
39 3BXC 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118