Sequence Similarity Clusters for the Entities in PDB 3U0N

Entity #1 | Chains: A
mRuby protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27812
95 % 2 3 23210 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 22501
70 % 5 39 370
50 % 30 194 19
40 % 32 200 25
30 % 148 521 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NED 1 A PAmCherry1 protein 86600
2 4Q9W 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
3 3E5T 1 A Red fluorescent protein eqFP611 6118
4 2H5O 1 A, B mOrange 86600
5 3LF3 1 A Fast Fluorescent Timer Fast-FT 86600
6 3PIB 1 A, B, C, D eqFP578 fluorescent protein 6118
7 2HQK 1 A Cyan fluorescent chromoprotein 86521
8 2H5P 1 A mStrawberry 86600
9 3U0L 1 A mRuby 6118
10 4Q7U 1 A PSmOrange2 86600
11 2H5Q 1 A mCherry 86600
12 1XMZ 1 A, B GFP-like chromoprotein FP595 6108
13 1ZGO 1 A, B, C, D Red fluorescent protein drFP583 86600
14 4DXM 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
15 4Q7R 1 A, B LSSmOrange 86600
16 2QLI 1 A, B Fluorescent protein plum 301246
17 2ZO6 1 A CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) RESIDUES 1-218 496660
18 5LK4 1 A mScarlet Red Fluorescent Protein mScarlet 86600
19 2GW3 1 A, B Kaede 196280
20 3KCS 1 A PAmCherry1 protein 86600
21 4R6D 1 A GFP-like fluorescent chromoprotein cFP484 unp residues 44-258 86521
22 3NT3 1 A, B, C, D LSSmKate2 red fluorescent protein 32630
23 2OTE 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
24 5FHV 1 A mCherry-BME 86600
25 5OQ9 1 A Green to red photoconvertible GFP-like protein EosFP 46758
26 2ICR 1 A, B, C, D Red fluorescent protein zoanRFP 105402
27 4GOB 1 A, B, C, D Kaede-type Fluorescent Protein 32630
28 5OQA 1 A Green to red photoconvertible GFP-like protein EosFP 46758
29 2DDD 1 A, B photoconvertible fluorescent protein 102203
30 3U0N 1 A mRuby 6118
31 2H5R 1 A mStrawberry 86600
32 2DDC 1 A, B photoconvertible fluorescent protein 102203
33 2ZO7 1 A CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) RESIDUES 1-220 496660
34 3IP2 1 A Neptune red fluorescent protein 6118
35 2VAD 1 A RED FLUORESCENT PROTEIN 86600
36 5EJU 1 A Reversibly photoswitching protein Dathail 32630
37 4DXI 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
38 2VAE 1 A, B, C, D, E, F, G, H RED FLUORESCENT PROTEIN 86600
39 4EDS 1 A, B far-red fluorescent protein eqFP650 6118
40 5EB6 1 A Reversible photoswitching chromoprotein Dathail 32630
41 2A46 1 A GFP-like fluorescent chromoprotein amFP486 105399
42 3PJ5 1 A, B Red fluorescent protein eqFP578 6118
43 3LS3 1 A, B, C, D Padron0.9 46733
44 5EXU 1 A Reversibly photoswitching protein Dathail 32630
45 3U0M 1 A mRuby 6118
46 1XSS 1 A, B fluorescent protein 102203
47 3KCT 1 A PAmCherry1 protein 86600
48 4OJ0 1 A, B, C, D Fluorescent protein FP480 6118
49 5EB7 1 A Reversibly photoswitching chromoprotein Dathail 32630
50 3IR8 1 A, B Large stokes shift fluorescent protein 321802
51 4H3L 1 A, B Fluorescent protein plum 301246
52 2A47 1 A GFP-like fluorescent chromoprotein amFP486 105399
53 4KPI 1 A Reversibly photoswitchable red fluorescent protein rsTagRFP 32630
54 3NEZ 1 A, B, C, D mRojoA 86600
55 2Z1O 1 A, B, C, D Fluorescent protein Dronpa 301887
56 2ZMU 1 A Fluorescent protein 496660
57 3E5W 1 A, B, C, D Red fluorescent protein eqFP611 6118
58 4DXP 1 A LEA X121 GFP-LIKE PROTEINS 32630
59 3LSA 1 A, B, C, D Padron0.9 46733
60 3PJB 1 A, B Red fluorescent protein eqFP578 6118
61 4ZIN 1 A, B, C MCherry fluorescent protein 770
62 3BXA 1 A, B Far-red fluorescent protein mKate 6118
63 2IE2 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
64 3MGF 1 A, B, C, D Fluorescent protein 496660
65 4DXN 1 A LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS 32630
66 2QLG 1 A Fluorescent protein plum 301246
67 2QLG 2 B Fluorescent protein plum 301246
68 5H89 1 A, B, C, D mRojoA fluorescent protein 86600
69 3U8A 1 A, B, C, D Fluorescent protein rsTagRFP 32630
70 5HZU 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
71 3SVS 1 A, B, C, D, E, F, G, H mKate S158A/S143C 32630
72 2GX2 1 A, B, C, D, E, F, G, H, I, J, K, L fluorescent protein Dronpa Green fluorescent protein 301887
73 2OTB 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
74 2OGR 1 A, B, C, D FLUORESCENT PROTEIN FP538 105402
75 5EXB 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein 51110
76 2VVH 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
77 2IOV 1 A, B, C, D Fluorescent protein Dronpa 301887
78 4EDO 1 A, B far-red fluorescent protein eqFP650 6118
79 3NF0 1 A Fluorescent protein plum 301246
80 5OOZ 1 A Green to red photoconvertible GFP-like protein EosFP 46758
81 2Z6Z 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
82 2IB5 1 A, B, C, D, E, F, G, H Chromo protein 58804
83 5OQE 1 A Green to red photoconvertible GFP-like protein EosFP 46758
84 3SVN 1 A, B, C, D mKate 32630
85 4TZA 1 A, B, C, D Fluorescent Protein 32630
86 3BX9 1 A, B Far-red fluorescent protein mKate 6118
87 2GX0 1 A, B, C, D fluorescent protein Dronpa Green fluorescent protein 301887
88 4Q9X 1 A GFP-like fluorescent chromoprotein cFP484 86521
89 4H3N 1 A Fluorescent protein plum 301246
90 2QLH 1 A, B Fluorescent protein plum 301246
91 3PJ7 1 A, B, C, D Red fluorescent protein eqFP578 6118
92 3SVR 1 A, B, C, D mkate S158A/S143C 32630
93 3TMR 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
94 2WHT 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
95 2POX 1 A, B, C, D Fluorescent protein Dronpa 301887
96 1GGX 1 A, B, C, D PROTEIN (FLUORESCENT PROTEIN FP583) RESIDUE CRQ 68 IS MADE FROM RESIDUES GLN 66, TYR 67 AND GLY 68. 86600
97 5FVG 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GFP-LIKE PROTEIN EOSFP 46758
98 1G7K 1 A, B, C, D FLUORESCENT PROTEIN FP583 86600
99 4LJC 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
100 1ZGQ 1 A, B, C, D, E, F, G, H Red fluorescent protein drFP583 86600
101 3SVO 1 A, B, C, D mKate S158A/S143C 32630
102 1ZUX 1 A, B, C, D green to red photoconvertible GPF-like protein EosFP 46758
103 5JVA 1 A, B, C, D TagRFP-T 32630
104 2P4M 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
105 4EMQ 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
106 4HQ8 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
107 3H1O 1 A, B Fluorescent protein FP480 6118
108 4DXQ 1 A LEA Q38A GFP-LIKE PROTEINS 32630
109 2A48 1 A GFP-like fluorescent chromoprotein amFP486 105399
110 4UTS 1 A, B, C, D FLUORESCENT PROTEIN DRONPA FLUORESCENT PROTEIN, RESIDUES 2-217 301887
111 3NT9 1 A, B, C, D LSSmKate1 red fluorescent protein 32630
112 5H88 1 A, B, C, D mRojoA fluorescent protein 86600
113 4Q7T 1 A, B PSmOrange 86600
114 2VVJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
115 4TZG 1 A, B, C, D, E, F, G, H Fluorescent Protein 32630
116 4HQC 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
117 2VVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
118 4PPK 1 A, B, C, D Monomeric Azami Green 32630
119 2ZMW 1 A, B, C, D Fluorescent protein 496660
120 2IB6 1 A, B, C, D, E, F, G, H Yellow mutant chromo protein 58804
121 2BTJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 2-((1E)-2-(5-IMIDAZOLYL)ETHENYL)-4-(P-HYDROXYBENZYLIDENE)-5-IMIDAZOLINONE CHROMOPHORE CONTAINED WITHIN PROTEIN AT POSITION 62-64 OF THE PROTEIN SEQUENCE 46758
122 2C9I 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN ASFP499 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN63 AND GLY65 AND COPLANAR TYR64 6108
123 1ZGP 1 A, B, C, D Red fluorescent protein drFP583 86600
124 3S05 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
125 4ZIO 1 A, B, C mCherry 86599
126 4R6B 1 A, B, C, D Green to red photoconvertible GFP-like protein EosFP 46758
127 3U8C 1 A, B, C, D Fluorescent protein rsTagRFP 32630
128 3CGL 1 A, B, C, D, E, F GFP-like fluorescent chromoprotein dsFP483 105400
129 3M22 1 A, B, C, D TagRFP 32630
130 3VIC 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
131 2Z6Y 1 A, B, C, D Fluorescent protein Dronpa 301887
132 4HQ9 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
133 5HZS 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
134 2VZX 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN 191210
135 2WHS 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
136 4H3M 1 A, B Fluorescent protein plum 301246
137 4KF4 1 A, B, C, D, E, F, G, H fluorescent protein sfCherry 32630
138 2PXS 1 A, B GFP-like fluorescent chromoprotein FP506 105402
139 2OJK 1 A, B GFP-like fluorescent chromoprotein FP506 105402
140 4IZN 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa 301887
141 2H8Q 1 A, B, C, D Red fluorescent protein drFP583 86600
142 4ZB1 1 A, B Blue chromoprotein, sgBP A tripeptide QYG chromophore 230562
143 3ZUF 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-218 301887
144 4OHS 1 A, B, C, D, E, F, G, H FAR-RED FLUORESCENT PROTEIN AQ143 6106
145 2ARL 1 A GFP-like non-fluorescent chromoprotein 105610
146 1XQM 1 A kindling fluorescent protein 6108
147 5H87 1 A, B, C, D mRojoA fluorescent protein 86600
148 4PPL 1 A, B, C, D Monomeric Azami Green 32630
149 3M24 1 A, B, C, D TagBFP 32630
150 5FVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
151 1YZW 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
152 2PXW 1 A, B GFP-like fluorescent chromoprotein FP506 105402
153 3E5V 1 A Red fluorescent protein eqFP611 6118
154 3VK1 1 A GFP-like non-fluorescent chromoprotein 105610
155 1UIS 1 A, B red fluorescent protein FP611 6118
156 4JC2 1 A, B, C, D, E, F asFP504 40679
157 3ADF 1 A, B Monomeric Azami Green 46745
158 4KGE 1 A, B TagRFP675, red fluorescent protein 32630
159 4KGF 1 A, B TagRFP675, red fluorescent protein 32630
160 5EBJ 1 A photoswitching chromogenic protein 32630
161 3ZUJ 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-217 301887
162 4PPJ 1 A, B, C, D Monomeric Azami Green 32630
163 1MOU 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
164 3ZUL 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA 301887
165 4OQW 1 A, B, C, D, E, F, G, H Fluorescent protein FP480 6118
166 5Y8R 1 A GFP-like fluorescent chromoprotein FP538 105402
167 5BQL 1 A, B, C, D Fluorescent protein cyOFP 562
168 2Z6X 1 A, B, C, D, E, F, G, H photochromic protein Dronpa 46733
169 3BXB 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
170 2FL1 1 A, B, C, D Red fluorescent protein zoanRFP 105402
171 3P8U 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
172 1XA9 1 A fluorescent protein FP538 105402
173 4DXO 1 A LEA X(6) GFP-LIKE PROTEINS 32630
174 3TMT 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
175 4LJD 1 A, B, D Green to red photoconvertible GPF-like protein EosFP 46758
176 4LJD 2 C Green to red photoconvertible GPF-like protein EosFP 46758
177 2V4E 1 A RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
178 2V4E 2 B RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
179 2V4E 3 C, D, E, F, G, H RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
180 1MOV 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
181 4NWS 1 A, B fluorescent protein 32630
182 4LJB 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
183 5FVF 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
184 3H1R 1 A Fluorescent protein FP480 6118
185 3SVU 1 A, B, C, D mkate S143C 32630
186 5Y8Q 1 A, B GFP-like fluorescent chromoprotein FP538 105402
187 4P76 1 A, B Photoconvertible fluorescent protein 102203
188 1XAE 1 A, B fluorescent protein FP538 105402
189 5DTL 1 A, B, C, D, E, F, G, H, I, J, K, L Green to red photoconvertible GPF-like protein EosFP 46758
190 3BXC 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
191 2WHU 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
192 5HZT 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
193 6B0B 4 D, H MCherry 86600
194 6BBO 4 D, H MCherry fluorescent protein 86600