Sequence Similarity Clusters for the Entities in PDB 3U0N

Entity #1 | Chains: A
mRuby protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27208
95 % 2 3 22734
90 % 2 3 22056
70 % 5 39 352
50 % 28 188 19
40 % 30 194 21
30 % 136 489 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NED 1 A PAmCherry1 protein 86600
2 4Q9W 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
3 3E5T 1 A Red fluorescent protein eqFP611 6118
4 2H5O 1 A, B mOrange 86600
5 3LF3 1 A Fast Fluorescent Timer Fast-FT 86600
6 3PIB 1 A, B, C, D eqFP578 fluorescent protein 6118
7 2HQK 1 A Cyan fluorescent chromoprotein 86521
8 2H5P 1 A mStrawberry 86600
9 3U0L 1 A mRuby 6118
10 4Q7U 1 A PSmOrange2 86600
11 2H5Q 1 A mCherry 86600
12 1XMZ 1 A, B GFP-like chromoprotein FP595 6108
13 1ZGO 1 A, B, C, D Red fluorescent protein drFP583 86600
14 4DXM 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
15 4Q7R 1 A, B LSSmOrange 86600
16 2QLI 1 A, B Fluorescent protein plum 301246
17 2ZO6 1 A CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) RESIDUES 1-218 496660
18 5LK4 1 A mScarlet Red Fluorescent Protein mScarlet 86600
19 2GW3 1 A, B Kaede 196280
20 3KCS 1 A PAmCherry1 protein 86600
21 4R6D 1 A GFP-like fluorescent chromoprotein cFP484 unp residues 44-258 86521
22 3NT3 1 A, B, C, D LSSmKate2 red fluorescent protein 32630
23 2OTE 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
24 5FHV 1 A mCherry-BME 86600
25 2ICR 1 A, B, C, D Red fluorescent protein zoanRFP 105402
26 4GOB 1 A, B, C, D Kaede-type Fluorescent Protein 32630
27 2DDD 1 A, B photoconvertible fluorescent protein 102203
28 3U0N 1 A mRuby 6118
29 2H5R 1 A mStrawberry 86600
30 2DDC 1 A, B photoconvertible fluorescent protein 102203
31 2ZO7 1 A CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) RESIDUES 1-220 496660
32 3IP2 1 A Neptune red fluorescent protein 6118
33 2VAD 1 A RED FLUORESCENT PROTEIN 86600
34 5EJU 1 A Reversibly photoswitching protein Dathail 32630
35 4DXI 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
36 2VAE 1 A, B, C, D, E, F, G, H RED FLUORESCENT PROTEIN 86600
37 4EDS 1 A, B far-red fluorescent protein eqFP650 6118
38 5EB6 1 A Reversible photoswitching chromoprotein Dathail 32630
39 2A46 1 A GFP-like fluorescent chromoprotein amFP486 105399
40 3PJ5 1 A, B Red fluorescent protein eqFP578 6118
41 3LS3 1 A, B, C, D Padron0.9 46733
42 5EXU 1 A Reversibly photoswitching protein Dathail 32630
43 3U0M 1 A mRuby 6118
44 1XSS 1 A, B fluorescent protein 102203
45 3KCT 1 A PAmCherry1 protein 86600
46 4OJ0 1 A, B, C, D Fluorescent protein FP480 6118
47 5EB7 1 A Reversibly photoswitching chromoprotein Dathail 32630
48 3IR8 1 A, B Large stokes shift fluorescent protein 321802
49 4H3L 1 A, B Fluorescent protein plum 301246
50 2A47 1 A GFP-like fluorescent chromoprotein amFP486 105399
51 4KPI 1 A Reversibly photoswitchable red fluorescent protein rsTagRFP 32630
52 3NEZ 1 A, B, C, D mRojoA 86600
53 2Z1O 1 A, B, C, D Fluorescent protein Dronpa 301887
54 2ZMU 1 A Fluorescent protein 496660
55 3E5W 1 A, B, C, D Red fluorescent protein eqFP611 6118
56 4DXP 1 A LEA X121 GFP-LIKE PROTEINS 32630
57 3LSA 1 A, B, C, D Padron0.9 46733
58 3PJB 1 A, B Red fluorescent protein eqFP578 6118
59 4ZIN 1 A, B, C MCherry fluorescent protein 770
60 3BXA 1 A, B Far-red fluorescent protein mKate 6118
61 2IE2 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
62 3MGF 1 A, B, C, D Fluorescent protein 496660
63 4DXN 1 A LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS 32630
64 2QLG 1 A Fluorescent protein plum 301246
65 2QLG 2 B Fluorescent protein plum 301246
66 5H89 1 A, B, C, D mRojoA fluorescent protein 86600
67 3U8A 1 A, B, C, D Fluorescent protein rsTagRFP 32630
68 5HZU 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
69 3SVS 1 A, B, C, D, E, F, G, H mKate S158A/S143C 32630
70 2GX2 1 A, B, C, D, E, F, G, H, I, J, K, L fluorescent protein Dronpa Green fluorescent protein 301887
71 2OTB 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
72 2OGR 1 A, B, C, D FLUORESCENT PROTEIN FP538 105402
73 5EXB 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein 51110
74 2VVH 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
75 2IOV 1 A, B, C, D Fluorescent protein Dronpa 301887
76 4EDO 1 A, B far-red fluorescent protein eqFP650 6118
77 3NF0 1 A Fluorescent protein plum 301246
78 2Z6Z 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
79 2IB5 1 A, B, C, D, E, F, G, H Chromo protein 58804
80 3SVN 1 A, B, C, D mKate 32630
81 4TZA 1 A, B, C, D Fluorescent Protein 32630
82 3BX9 1 A, B Far-red fluorescent protein mKate 6118
83 2GX0 1 A, B, C, D fluorescent protein Dronpa Green fluorescent protein 301887
84 4Q9X 1 A GFP-like fluorescent chromoprotein cFP484 86521
85 4H3N 1 A Fluorescent protein plum 301246
86 2QLH 1 A, B Fluorescent protein plum 301246
87 3PJ7 1 A, B, C, D Red fluorescent protein eqFP578 6118
88 3SVR 1 A, B, C, D mkate S158A/S143C 32630
89 3TMR 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
90 2WHT 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
91 2POX 1 A, B, C, D Fluorescent protein Dronpa 301887
92 1GGX 1 A, B, C, D PROTEIN (FLUORESCENT PROTEIN FP583) RESIDUE CRQ 68 IS MADE FROM RESIDUES GLN 66, TYR 67 AND GLY 68. 86600
93 5FVG 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GFP-LIKE PROTEIN EOSFP 46758
94 1G7K 1 A, B, C, D FLUORESCENT PROTEIN FP583 86600
95 4LJC 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
96 1ZGQ 1 A, B, C, D, E, F, G, H Red fluorescent protein drFP583 86600
97 3SVO 1 A, B, C, D mKate S158A/S143C 32630
98 1ZUX 1 A, B, C, D green to red photoconvertible GPF-like protein EosFP 46758
99 5JVA 1 A, B, C, D TagRFP-T 32630
100 2P4M 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
101 4EMQ 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
102 4HQ8 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
103 3H1O 1 A, B Fluorescent protein FP480 6118
104 4DXQ 1 A LEA Q38A GFP-LIKE PROTEINS 32630
105 2A48 1 A GFP-like fluorescent chromoprotein amFP486 105399
106 4UTS 1 A, B, C, D FLUORESCENT PROTEIN DRONPA FLUORESCENT PROTEIN, RESIDUES 2-217 301887
107 3NT9 1 A, B, C, D LSSmKate1 red fluorescent protein 32630
108 5H88 1 A, B, C, D mRojoA fluorescent protein 86600
109 4Q7T 1 A, B PSmOrange 86600
110 2VVJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
111 4TZG 1 A, B, C, D, E, F, G, H Fluorescent Protein 32630
112 4HQC 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
113 2VVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
114 4PPK 1 A, B, C, D Monomeric Azami Green 32630
115 2ZMW 1 A, B, C, D Fluorescent protein 496660
116 2IB6 1 A, B, C, D, E, F, G, H Yellow mutant chromo protein 58804
117 2BTJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 2-((1E)-2-(5-IMIDAZOLYL)ETHENYL)-4-(P-HYDROXYBENZYLIDENE)-5-IMIDAZOLINONE CHROMOPHORE CONTAINED WITHIN PROTEIN AT POSITION 62-64 OF THE PROTEIN SEQUENCE 46758
118 2C9I 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN ASFP499 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN63 AND GLY65 AND COPLANAR TYR64 6108
119 1ZGP 1 A, B, C, D Red fluorescent protein drFP583 86600
120 3S05 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
121 4ZIO 1 A, B, C mCherry 86599
122 4R6B 1 A, B, C, D Green to red photoconvertible GFP-like protein EosFP 46758
123 3U8C 1 A, B, C, D Fluorescent protein rsTagRFP 32630
124 3CGL 1 A, B, C, D, E, F GFP-like fluorescent chromoprotein dsFP483 105400
125 3M22 1 A, B, C, D TagRFP 32630
126 3VIC 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
127 2Z6Y 1 A, B, C, D Fluorescent protein Dronpa 301887
128 4HQ9 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
129 5HZS 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
130 2VZX 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN 191210
131 2WHS 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
132 4H3M 1 A, B Fluorescent protein plum 301246
133 4KF4 1 A, B, C, D, E, F, G, H fluorescent protein sfCherry 32630
134 2PXS 1 A, B GFP-like fluorescent chromoprotein FP506 105402
135 2OJK 1 A, B GFP-like fluorescent chromoprotein FP506 105402
136 4IZN 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa 301887
137 2H8Q 1 A, B, C, D Red fluorescent protein drFP583 86600
138 4ZB1 1 A, B Blue chromoprotein, sgBP A tripeptide QYG chromophore 230562
139 3ZUF 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-218 301887
140 4OHS 1 A, B, C, D, E, F, G, H FAR-RED FLUORESCENT PROTEIN AQ143 6106
141 2ARL 1 A GFP-like non-fluorescent chromoprotein 105610
142 1XQM 1 A kindling fluorescent protein 6108
143 5H87 1 A, B, C, D mRojoA fluorescent protein 86600
144 4PPL 1 A, B, C, D Monomeric Azami Green 32630
145 3M24 1 A, B, C, D TagBFP 32630
146 5FVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
147 1YZW 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
148 2PXW 1 A, B GFP-like fluorescent chromoprotein FP506 105402
149 3E5V 1 A Red fluorescent protein eqFP611 6118
150 3VK1 1 A GFP-like non-fluorescent chromoprotein 105610
151 1UIS 1 A, B red fluorescent protein FP611 6118
152 4JC2 1 A, B, C, D, E, F asFP504 40679
153 3ADF 1 A, B Monomeric Azami Green 46745
154 4KGE 1 A, B TagRFP675, red fluorescent protein 32630
155 4KGF 1 A, B TagRFP675, red fluorescent protein 32630
156 5EBJ 1 A photoswitching chromogenic protein 32630
157 3ZUJ 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-217 301887
158 4PPJ 1 A, B, C, D Monomeric Azami Green 32630
159 1MOU 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
160 3ZUL 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA 301887
161 4OQW 1 A, B, C, D, E, F, G, H Fluorescent protein FP480 6118
162 5Y8R 1 A GFP-like fluorescent chromoprotein FP538 105402
163 5BQL 1 A, B, C, D Fluorescent protein cyOFP 562
164 2Z6X 1 A, B, C, D, E, F, G, H photochromic protein Dronpa 46733
165 3BXB 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
166 2FL1 1 A, B, C, D Red fluorescent protein zoanRFP 105402
167 3P8U 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
168 1XA9 1 A fluorescent protein FP538 105402
169 4DXO 1 A LEA X(6) GFP-LIKE PROTEINS 32630
170 3TMT 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
171 4LJD 1 A, B, D Green to red photoconvertible GPF-like protein EosFP 46758
172 4LJD 2 C Green to red photoconvertible GPF-like protein EosFP 46758
173 2V4E 1 A RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
174 2V4E 2 B RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
175 2V4E 3 C, D, E, F, G, H RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
176 1MOV 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
177 4NWS 1 A, B fluorescent protein 32630
178 4LJB 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
179 5FVF 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
180 3H1R 1 A Fluorescent protein FP480 6118
181 3SVU 1 A, B, C, D mkate S143C 32630
182 5Y8Q 1 A, B GFP-like fluorescent chromoprotein FP538 105402
183 4P76 1 A, B Photoconvertible fluorescent protein 102203
184 1XAE 1 A, B fluorescent protein FP538 105402
185 5DTL 1 A, B, C, D, E, F, G, H, I, J, K, L Green to red photoconvertible GPF-like protein EosFP 46758
186 3BXC 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
187 2WHU 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
188 5HZT 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887