Sequence Similarity Clusters for the Entities in PDB 3U0N

Entity #1 | Chains: A
mRuby protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27663
95 % 2 3 25298 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 24426
70 % 5 39 380
50 % 30 198 22
40 % 32 203 32
30 % 149 530 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NED 1 A PAmCherry1 protein 86600
2 4Q9W 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
3 3E5T 1 A Red fluorescent protein eqFP611 6118
4 2H5O 1 A, B mOrange 86600
5 3LF3 1 A Fast Fluorescent Timer Fast-FT 86600
6 3PIB 1 A, B, C, D eqFP578 fluorescent protein 6118
7 2HQK 1 A Cyan fluorescent chromoprotein 86521
8 2H5P 1 A mStrawberry 86600
9 3U0L 1 A mRuby 6118
10 4Q7U 1 A PSmOrange2 86600
11 2H5Q 1 A mCherry 86600
12 1XMZ 1 A, B GFP-like chromoprotein FP595 6108
13 1ZGO 1 A, B, C, D Red fluorescent protein drFP583 86600
14 4DXM 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
15 4Q7R 1 A, B LSSmOrange 86600
16 2QLI 1 A, B Fluorescent protein plum 301246
17 2ZO6 1 A CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) RESIDUES 1-218 496660
18 5LK4 1 A mScarlet Red Fluorescent Protein mScarlet 86600
19 2GW3 1 A, B Kaede 196280
20 3KCS 1 A PAmCherry1 protein 86600
21 4R6D 1 A GFP-like fluorescent chromoprotein cFP484 unp residues 44-258 86521
22 3NT3 1 A, B, C, D LSSmKate2 red fluorescent protein 32630
23 2OTE 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
24 5FHV 1 A mCherry-BME 86600
25 5OQ9 1 A Green to red photoconvertible GFP-like protein EosFP 46758
26 2ICR 1 A, B, C, D Red fluorescent protein zoanRFP 105402
27 4GOB 1 A, B, C, D Kaede-type Fluorescent Protein 32630
28 5OQA 1 A Green to red photoconvertible GFP-like protein EosFP 46758
29 2DDD 1 A, B photoconvertible fluorescent protein 102203
30 3U0N 1 A mRuby 6118
31 2H5R 1 A mStrawberry 86600
32 2DDC 1 A, B photoconvertible fluorescent protein 102203
33 2ZO7 1 A CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) RESIDUES 1-220 496660
34 3IP2 1 A Neptune red fluorescent protein 6118
35 2VAD 1 A RED FLUORESCENT PROTEIN 86600
36 5EJU 1 A Reversibly photoswitching protein Dathail 32630
37 4DXI 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
38 2VAE 1 A, B, C, D, E, F, G, H RED FLUORESCENT PROTEIN 86600
39 4EDS 1 A, B far-red fluorescent protein eqFP650 6118
40 5EB6 1 A Reversible photoswitching chromoprotein Dathail 32630
41 2A46 1 A GFP-like fluorescent chromoprotein amFP486 105399
42 3PJ5 1 A, B Red fluorescent protein eqFP578 6118
43 3LS3 1 A, B, C, D Padron0.9 46733
44 6DEJ 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
45 5EXU 1 A Reversibly photoswitching protein Dathail 32630
46 3U0M 1 A mRuby 6118
47 1XSS 1 A, B fluorescent protein 102203
48 3KCT 1 A PAmCherry1 protein 86600
49 4OJ0 1 A, B, C, D Fluorescent protein FP480 6118
50 5EB7 1 A Reversibly photoswitching chromoprotein Dathail 32630
51 3IR8 1 A, B Large stokes shift fluorescent protein 321802
52 4H3L 1 A, B Fluorescent protein plum 301246
53 2A47 1 A GFP-like fluorescent chromoprotein amFP486 105399
54 4KPI 1 A Reversibly photoswitchable red fluorescent protein rsTagRFP 32630
55 3NEZ 1 A, B, C, D mRojoA 86600
56 2Z1O 1 A, B, C, D Fluorescent protein Dronpa 301887
57 2ZMU 1 A Fluorescent protein 496660
58 3E5W 1 A, B, C, D Red fluorescent protein eqFP611 6118
59 4DXP 1 A LEA X121 GFP-LIKE PROTEINS 32630
60 3LSA 1 A, B, C, D Padron0.9 46733
61 3PJB 1 A, B Red fluorescent protein eqFP578 6118
62 4ZIN 1 A, B, C MCherry fluorescent protein 770
63 3BXA 1 A, B Far-red fluorescent protein mKate 6118
64 2IE2 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
65 3MGF 1 A, B, C, D Fluorescent protein 496660
66 4DXN 1 A LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS 32630
67 2QLG 1 A Fluorescent protein plum 301246
68 2QLG 2 B Fluorescent protein plum 301246
69 5H89 1 A, B, C, D mRojoA fluorescent protein 86600
70 3U8A 1 A, B, C, D Fluorescent protein rsTagRFP 32630
71 5HZU 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
72 3SVS 1 A, B, C, D, E, F, G, H mKate S158A/S143C 32630
73 2GX2 1 A, B, C, D, E, F, G, H, I, J, K, L fluorescent protein Dronpa Green fluorescent protein 301887
74 2OTB 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
75 2OGR 1 A, B, C, D FLUORESCENT PROTEIN FP538 105402
76 5EXB 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein 51110
77 2VVH 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
78 2IOV 1 A, B, C, D Fluorescent protein Dronpa 301887
79 4EDO 1 A, B far-red fluorescent protein eqFP650 6118
80 3NF0 1 A Fluorescent protein plum 301246
81 5OOZ 1 A Green to red photoconvertible GFP-like protein EosFP 46758
82 2Z6Z 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
83 2IB5 1 A, B, C, D, E, F, G, H Chromo protein 58804
84 5OQE 1 A Green to red photoconvertible GFP-like protein EosFP 46758
85 3SVN 1 A, B, C, D mKate 32630
86 4TZA 1 A, B, C, D Fluorescent Protein 32630
87 3BX9 1 A, B Far-red fluorescent protein mKate 6118
88 2GX0 1 A, B, C, D fluorescent protein Dronpa Green fluorescent protein 301887
89 4Q9X 1 A GFP-like fluorescent chromoprotein cFP484 86521
90 4H3N 1 A Fluorescent protein plum 301246
91 2QLH 1 A, B Fluorescent protein plum 301246
92 3PJ7 1 A, B, C, D Red fluorescent protein eqFP578 6118
93 3SVR 1 A, B, C, D mkate S158A/S143C 32630
94 3TMR 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
95 2WHT 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
96 2POX 1 A, B, C, D Fluorescent protein Dronpa 301887
97 1GGX 1 A, B, C, D PROTEIN (FLUORESCENT PROTEIN FP583) RESIDUE CRQ 68 IS MADE FROM RESIDUES GLN 66, TYR 67 AND GLY 68. 86600
98 5FVG 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GFP-LIKE PROTEIN EOSFP 46758
99 1G7K 1 A, B, C, D FLUORESCENT PROTEIN FP583 86600
100 4LJC 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
101 1ZGQ 1 A, B, C, D, E, F, G, H Red fluorescent protein drFP583 86600
102 3SVO 1 A, B, C, D mKate S158A/S143C 32630
103 1ZUX 1 A, B, C, D green to red photoconvertible GPF-like protein EosFP 46758
104 5JVA 1 A, B, C, D TagRFP-T 32630
105 2P4M 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
106 4EMQ 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
107 4HQ8 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
108 3H1O 1 A, B Fluorescent protein FP480 6118
109 4DXQ 1 A LEA Q38A GFP-LIKE PROTEINS 32630
110 2A48 1 A GFP-like fluorescent chromoprotein amFP486 105399
111 4UTS 1 A, B, C, D FLUORESCENT PROTEIN DRONPA FLUORESCENT PROTEIN, RESIDUES 2-217 301887
112 3NT9 1 A, B, C, D LSSmKate1 red fluorescent protein 32630
113 5H88 1 A, B, C, D mRojoA fluorescent protein 86600
114 4Q7T 1 A, B PSmOrange 86600
115 2VVJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
116 4TZG 1 A, B, C, D, E, F, G, H Fluorescent Protein 32630
117 4HQC 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
118 2VVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
119 4PPK 1 A, B, C, D Monomeric Azami Green 32630
120 2ZMW 1 A, B, C, D Fluorescent protein 496660
121 2IB6 1 A, B, C, D, E, F, G, H Yellow mutant chromo protein 58804
122 2BTJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 2-((1E)-2-(5-IMIDAZOLYL)ETHENYL)-4-(P-HYDROXYBENZYLIDENE)-5-IMIDAZOLINONE CHROMOPHORE CONTAINED WITHIN PROTEIN AT POSITION 62-64 OF THE PROTEIN SEQUENCE 46758
123 2C9I 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN ASFP499 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN63 AND GLY65 AND COPLANAR TYR64 6108
124 1ZGP 1 A, B, C, D Red fluorescent protein drFP583 86600
125 3S05 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
126 4ZIO 1 A, B, C mCherry 86599
127 4R6B 1 A, B, C, D Green to red photoconvertible GFP-like protein EosFP 46758
128 3U8C 1 A, B, C, D Fluorescent protein rsTagRFP 32630
129 3CGL 1 A, B, C, D, E, F GFP-like fluorescent chromoprotein dsFP483 105400
130 3M22 1 A, B, C, D TagRFP 32630
131 3VIC 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
132 2Z6Y 1 A, B, C, D Fluorescent protein Dronpa 301887
133 4HQ9 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
134 5HZS 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
135 2VZX 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN 191210
136 2WHS 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
137 4H3M 1 A, B Fluorescent protein plum 301246
138 4KF4 1 A, B, C, D, E, F, G, H fluorescent protein sfCherry 32630
139 2PXS 1 A, B GFP-like fluorescent chromoprotein FP506 105402
140 2OJK 1 A, B GFP-like fluorescent chromoprotein FP506 105402
141 4IZN 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa 301887
142 2H8Q 1 A, B, C, D Red fluorescent protein drFP583 86600
143 4ZB1 1 A, B Blue chromoprotein, sgBP A tripeptide QYG chromophore 230562
144 3ZUF 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-218 301887
145 4OHS 1 A, B, C, D, E, F, G, H FAR-RED FLUORESCENT PROTEIN AQ143 6106
146 2ARL 1 A GFP-like non-fluorescent chromoprotein 105610
147 1XQM 1 A kindling fluorescent protein 6108
148 5H87 1 A, B, C, D mRojoA fluorescent protein 86600
149 4PPL 1 A, B, C, D Monomeric Azami Green 32630
150 3M24 1 A, B, C, D TagBFP 32630
151 5FVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
152 1YZW 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
153 2PXW 1 A, B GFP-like fluorescent chromoprotein FP506 105402
154 3E5V 1 A Red fluorescent protein eqFP611 6118
155 3VK1 1 A GFP-like non-fluorescent chromoprotein 105610
156 1UIS 1 A, B red fluorescent protein FP611 6118
157 4JC2 1 A, B, C, D, E, F asFP504 40679
158 3ADF 1 A, B Monomeric Azami Green 46745
159 4KGE 1 A, B TagRFP675, red fluorescent protein 32630
160 4KGF 1 A, B TagRFP675, red fluorescent protein 32630
161 5EBJ 1 A photoswitching chromogenic protein 32630
162 3ZUJ 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-217 301887
163 4PPJ 1 A, B, C, D Monomeric Azami Green 32630
164 1MOU 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
165 3ZUL 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA 301887
166 4OQW 1 A, B, C, D, E, F, G, H Fluorescent protein FP480 6118
167 5Y8R 1 A GFP-like fluorescent chromoprotein FP538 105402
168 5BQL 1 A, B, C, D Fluorescent protein cyOFP 562
169 2Z6X 1 A, B, C, D, E, F, G, H photochromic protein Dronpa 46733
170 3BXB 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
171 2FL1 1 A, B, C, D Red fluorescent protein zoanRFP 105402
172 3P8U 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
173 1XA9 1 A fluorescent protein FP538 105402
174 4DXO 1 A LEA X(6) GFP-LIKE PROTEINS 32630
175 3TMT 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
176 4LJD 1 A, B, D Green to red photoconvertible GPF-like protein EosFP 46758
177 4LJD 2 C Green to red photoconvertible GPF-like protein EosFP 46758
178 2V4E 1 A RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
179 2V4E 2 B RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
180 2V4E 3 C, D, E, F, G, H RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
181 1MOV 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
182 4NWS 1 A, B fluorescent protein 32630
183 4LJB 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
184 5FVF 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
185 4KF5 2 C, D fluorescent protein sfCherry+GFP10-11 32630
186 3H1R 1 A Fluorescent protein FP480 6118
187 3SVU 1 A, B, C, D mkate S143C 32630
188 5Y8Q 1 A, B GFP-like fluorescent chromoprotein FP538 105402
189 4P76 1 A, B Photoconvertible fluorescent protein 102203
190 1XAE 1 A, B fluorescent protein FP538 105402
191 5DTL 1 A, B, C, D, E, F, G, H, I, J, K, L Green to red photoconvertible GPF-like protein EosFP 46758
192 6D38 1 A Fluorescent protein Dronpa 301887
193 6D39 1 A Fluorescent protein Dronpa 301887
194 3BXC 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
195 2WHU 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
196 5HZT 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
197 6B0B 4 D, H MCherry 86600
198 6BBO 4 D, H MCherry fluorescent protein 86600