Sequence Similarity Clusters for the Entities in PDB 3U0N

Entity #1 | Chains: A
mRuby protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27531
95 % 2 3 22997 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 22301
70 % 5 39 363
50 % 30 193 18
40 % 32 199 22
30 % 146 513 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NED 1 A PAmCherry1 protein 86600
2 4Q9W 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
3 3E5T 1 A Red fluorescent protein eqFP611 6118
4 2H5O 1 A, B mOrange 86600
5 3LF3 1 A Fast Fluorescent Timer Fast-FT 86600
6 3PIB 1 A, B, C, D eqFP578 fluorescent protein 6118
7 2HQK 1 A Cyan fluorescent chromoprotein 86521
8 2H5P 1 A mStrawberry 86600
9 3U0L 1 A mRuby 6118
10 5LTR 1 A mNeonGreen Yellow-Green Fluorescent Protein mNeonGreen 7740
11 4Q7U 1 A PSmOrange2 86600
12 2H5Q 1 A mCherry 86600
13 1XMZ 1 A, B GFP-like chromoprotein FP595 6108
14 1ZGO 1 A, B, C, D Red fluorescent protein drFP583 86600
15 4DXM 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
16 4Q7R 1 A, B LSSmOrange 86600
17 2QLI 1 A, B Fluorescent protein plum 301246
18 2ZO6 1 A CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) RESIDUES 1-218 496660
19 5LK4 1 A mScarlet Red Fluorescent Protein mScarlet 86600
20 2GW3 1 A, B Kaede 196280
21 2C9J 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN FP512 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN62 AND GLY64 BACKBONE ATOMS AND COPLANAR TYR63 208460
22 3KCS 1 A PAmCherry1 protein 86600
23 4R6D 1 A GFP-like fluorescent chromoprotein cFP484 unp residues 44-258 86521
24 3NT3 1 A, B, C, D LSSmKate2 red fluorescent protein 32630
25 2OTE 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
26 5FHV 1 A mCherry-BME 86600
27 5OQ9 1 A Green to red photoconvertible GFP-like protein EosFP 46758
28 2ICR 1 A, B, C, D Red fluorescent protein zoanRFP 105402
29 4GOB 1 A, B, C, D Kaede-type Fluorescent Protein 32630
30 5OQA 1 A Green to red photoconvertible GFP-like protein EosFP 46758
31 2DDD 1 A, B photoconvertible fluorescent protein 102203
32 3U0N 1 A mRuby 6118
33 2H5R 1 A mStrawberry 86600
34 2DDC 1 A, B photoconvertible fluorescent protein 102203
35 2ZO7 1 A CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) RESIDUES 1-220 496660
36 3IP2 1 A Neptune red fluorescent protein 6118
37 2VAD 1 A RED FLUORESCENT PROTEIN 86600
38 5EJU 1 A Reversibly photoswitching protein Dathail 32630
39 4DXI 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
40 2VAE 1 A, B, C, D, E, F, G, H RED FLUORESCENT PROTEIN 86600
41 4EDS 1 A, B far-red fluorescent protein eqFP650 6118
42 5EB6 1 A Reversible photoswitching chromoprotein Dathail 32630
43 2A46 1 A GFP-like fluorescent chromoprotein amFP486 105399
44 3PJ5 1 A, B Red fluorescent protein eqFP578 6118
45 3LS3 1 A, B, C, D Padron0.9 46733
46 5EXU 1 A Reversibly photoswitching protein Dathail 32630
47 3U0M 1 A mRuby 6118
48 1XSS 1 A, B fluorescent protein 102203
49 3KCT 1 A PAmCherry1 protein 86600
50 4OJ0 1 A, B, C, D Fluorescent protein FP480 6118
51 5EB7 1 A Reversibly photoswitching chromoprotein Dathail 32630
52 3IR8 1 A, B Large stokes shift fluorescent protein 321802
53 4H3L 1 A, B Fluorescent protein plum 301246
54 2A47 1 A GFP-like fluorescent chromoprotein amFP486 105399
55 4KPI 1 A Reversibly photoswitchable red fluorescent protein rsTagRFP 32630
56 3NEZ 1 A, B, C, D mRojoA 86600
57 2Z1O 1 A, B, C, D Fluorescent protein Dronpa 301887
58 5LTP 1 A, B, C, D, E, F mNeonGreen Yellow-Green Fluorescent Protein mNeonGreen 7740
59 2ZMU 1 A Fluorescent protein 496660
60 3E5W 1 A, B, C, D Red fluorescent protein eqFP611 6118
61 4DXP 1 A LEA X121 GFP-LIKE PROTEINS 32630
62 3LSA 1 A, B, C, D Padron0.9 46733
63 3PJB 1 A, B Red fluorescent protein eqFP578 6118
64 4ZIN 1 A, B, C MCherry fluorescent protein 770
65 3BXA 1 A, B Far-red fluorescent protein mKate 6118
66 2IE2 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
67 3MGF 1 A, B, C, D Fluorescent protein 496660
68 4DXN 1 A LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS 32630
69 2QLG 1 A Fluorescent protein plum 301246
70 2QLG 2 B Fluorescent protein plum 301246
71 5H89 1 A, B, C, D mRojoA fluorescent protein 86600
72 3U8A 1 A, B, C, D Fluorescent protein rsTagRFP 32630
73 5HZU 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
74 2RH7 1 A, B, C, D Green fluorescent protein 6136
75 3SVS 1 A, B, C, D, E, F, G, H mKate S158A/S143C 32630
76 2GX2 1 A, B, C, D, E, F, G, H, I, J, K, L fluorescent protein Dronpa Green fluorescent protein 301887
77 2OTB 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
78 2OGR 1 A, B, C, D FLUORESCENT PROTEIN FP538 105402
79 5EXB 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein 51110
80 2VVH 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
81 2IOV 1 A, B, C, D Fluorescent protein Dronpa 301887
82 4EDO 1 A, B far-red fluorescent protein eqFP650 6118
83 3NF0 1 A Fluorescent protein plum 301246
84 5OOZ 1 A Green to red photoconvertible GFP-like protein EosFP 46758
85 2Z6Z 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
86 2IB5 1 A, B, C, D, E, F, G, H Chromo protein 58804
87 5OQE 1 A Green to red photoconvertible GFP-like protein EosFP 46758
88 3SVN 1 A, B, C, D mKate 32630
89 4TZA 1 A, B, C, D Fluorescent Protein 32630
90 3BX9 1 A, B Far-red fluorescent protein mKate 6118
91 2GX0 1 A, B, C, D fluorescent protein Dronpa Green fluorescent protein 301887
92 4Q9X 1 A GFP-like fluorescent chromoprotein cFP484 86521
93 4H3N 1 A Fluorescent protein plum 301246
94 2QLH 1 A, B Fluorescent protein plum 301246
95 3PJ7 1 A, B, C, D Red fluorescent protein eqFP578 6118
96 3SVR 1 A, B, C, D mkate S158A/S143C 32630
97 3TMR 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
98 2WHT 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
99 2POX 1 A, B, C, D Fluorescent protein Dronpa 301887
100 1GGX 1 A, B, C, D PROTEIN (FLUORESCENT PROTEIN FP583) RESIDUE CRQ 68 IS MADE FROM RESIDUES GLN 66, TYR 67 AND GLY 68. 86600
101 5FVG 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GFP-LIKE PROTEIN EOSFP 46758
102 1G7K 1 A, B, C, D FLUORESCENT PROTEIN FP583 86600
103 4LJC 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
104 1ZGQ 1 A, B, C, D, E, F, G, H Red fluorescent protein drFP583 86600
105 3SVO 1 A, B, C, D mKate S158A/S143C 32630
106 1ZUX 1 A, B, C, D green to red photoconvertible GPF-like protein EosFP 46758
107 5JVA 1 A, B, C, D TagRFP-T 32630
108 2P4M 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
109 4EMQ 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
110 4HQ8 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
111 3H1O 1 A, B Fluorescent protein FP480 6118
112 4DXQ 1 A LEA Q38A GFP-LIKE PROTEINS 32630
113 2A48 1 A GFP-like fluorescent chromoprotein amFP486 105399
114 4UTS 1 A, B, C, D FLUORESCENT PROTEIN DRONPA FLUORESCENT PROTEIN, RESIDUES 2-217 301887
115 3NT9 1 A, B, C, D LSSmKate1 red fluorescent protein 32630
116 5H88 1 A, B, C, D mRojoA fluorescent protein 86600
117 4Q7T 1 A, B PSmOrange 86600
118 2VVJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
119 4TZG 1 A, B, C, D, E, F, G, H Fluorescent Protein 32630
120 4HQC 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
121 2VVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
122 4PPK 1 A, B, C, D Monomeric Azami Green 32630
123 2ZMW 1 A, B, C, D Fluorescent protein 496660
124 2IB6 1 A, B, C, D, E, F, G, H Yellow mutant chromo protein 58804
125 2BTJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 2-((1E)-2-(5-IMIDAZOLYL)ETHENYL)-4-(P-HYDROXYBENZYLIDENE)-5-IMIDAZOLINONE CHROMOPHORE CONTAINED WITHIN PROTEIN AT POSITION 62-64 OF THE PROTEIN SEQUENCE 46758
126 2C9I 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN ASFP499 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN63 AND GLY65 AND COPLANAR TYR64 6108
127 1ZGP 1 A, B, C, D Red fluorescent protein drFP583 86600
128 3S05 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
129 4ZIO 1 A, B, C mCherry 86599
130 4R6B 1 A, B, C, D Green to red photoconvertible GFP-like protein EosFP 46758
131 3U8C 1 A, B, C, D Fluorescent protein rsTagRFP 32630
132 3CGL 1 A, B, C, D, E, F GFP-like fluorescent chromoprotein dsFP483 105400
133 3M22 1 A, B, C, D TagRFP 32630
134 3VIC 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
135 2Z6Y 1 A, B, C, D Fluorescent protein Dronpa 301887
136 4HQ9 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
137 5HZS 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
138 2VZX 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN 191210
139 2WHS 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
140 4H3M 1 A, B Fluorescent protein plum 301246
141 4KF4 1 A, B, C, D, E, F, G, H fluorescent protein sfCherry 32630
142 2PXS 1 A, B GFP-like fluorescent chromoprotein FP506 105402
143 2OJK 1 A, B GFP-like fluorescent chromoprotein FP506 105402
144 4IZN 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa 301887
145 2H8Q 1 A, B, C, D Red fluorescent protein drFP583 86600
146 4ZB1 1 A, B Blue chromoprotein, sgBP A tripeptide QYG chromophore 230562
147 3ZUF 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-218 301887
148 4OHS 1 A, B, C, D, E, F, G, H FAR-RED FLUORESCENT PROTEIN AQ143 6106
149 2ARL 1 A GFP-like non-fluorescent chromoprotein 105610
150 1XQM 1 A kindling fluorescent protein 6108
151 5H87 1 A, B, C, D mRojoA fluorescent protein 86600
152 5LTQ 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein blFP-Y3 Yellow Fluorescent Protein lanYFP 7740
153 4PPL 1 A, B, C, D Monomeric Azami Green 32630
154 3M24 1 A, B, C, D TagBFP 32630
155 5FVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
156 1YZW 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
157 2PXW 1 A, B GFP-like fluorescent chromoprotein FP506 105402
158 3E5V 1 A Red fluorescent protein eqFP611 6118
159 3VK1 1 A GFP-like non-fluorescent chromoprotein 105610
160 1UIS 1 A, B red fluorescent protein FP611 6118
161 4JC2 1 A, B, C, D, E, F asFP504 40679
162 3ADF 1 A, B Monomeric Azami Green 46745
163 4KGE 1 A, B TagRFP675, red fluorescent protein 32630
164 4KGF 1 A, B TagRFP675, red fluorescent protein 32630
165 5EBJ 1 A photoswitching chromogenic protein 32630
166 3ZUJ 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-217 301887
167 4PPJ 1 A, B, C, D Monomeric Azami Green 32630
168 1MOU 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
169 3ZUL 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA 301887
170 4OQW 1 A, B, C, D, E, F, G, H Fluorescent protein FP480 6118
171 5Y8R 1 A GFP-like fluorescent chromoprotein FP538 105402
172 5BQL 1 A, B, C, D Fluorescent protein cyOFP 562
173 2Z6X 1 A, B, C, D, E, F, G, H photochromic protein Dronpa 46733
174 3BXB 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
175 2FL1 1 A, B, C, D Red fluorescent protein zoanRFP 105402
176 3P8U 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
177 1XA9 1 A fluorescent protein FP538 105402
178 4DXO 1 A LEA X(6) GFP-LIKE PROTEINS 32630
179 3TMT 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
180 4LJD 1 A, B, D Green to red photoconvertible GPF-like protein EosFP 46758
181 4LJD 2 C Green to red photoconvertible GPF-like protein EosFP 46758
182 2V4E 1 A RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
183 2V4E 2 B RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
184 2V4E 3 C, D, E, F, G, H RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
185 1MOV 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
186 4NWS 1 A, B fluorescent protein 32630
187 4LJB 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
188 5FVF 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
189 4KF5 2 C, D fluorescent protein sfCherry+GFP10-11 32630
190 3H1R 1 A Fluorescent protein FP480 6118
191 3SVU 1 A, B, C, D mkate S143C 32630
192 5Y8Q 1 A, B GFP-like fluorescent chromoprotein FP538 105402
193 4P76 1 A, B Photoconvertible fluorescent protein 102203
194 1XAE 1 A, B fluorescent protein FP538 105402
195 5DTL 1 A, B, C, D, E, F, G, H, I, J, K, L Green to red photoconvertible GPF-like protein EosFP 46758
196 3BXC 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
197 2WHU 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
198 5HZT 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
199 6B0B 4 D, H MCherry 86600