Sequence Similarity Clusters for the Entities in PDB 3U0N

Entity #1 | Chains: A
mRuby protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28205
95 % 2 3 25771 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 3 24863
70 % 5 39 388
50 % 30 199 26
40 % 32 204 32
30 % 153 536 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NED 1 A PAmCherry1 protein 86600
2 4Q9W 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
3 3E5T 1 A Red fluorescent protein eqFP611 6118
4 2H5O 1 A, B mOrange 86600
5 3LF3 1 A Fast Fluorescent Timer Fast-FT 86600
6 3PIB 1 A, B, C, D eqFP578 fluorescent protein 6118
7 2HQK 1 A Cyan fluorescent chromoprotein 86521
8 2H5P 1 A mStrawberry 86600
9 3U0L 1 A mRuby 6118
10 5LTR 1 A mNeonGreen Yellow-Green Fluorescent Protein mNeonGreen 7740
11 4Q7U 1 A PSmOrange2 86600
12 2H5Q 1 A mCherry 86600
13 1XMZ 1 A, B GFP-like chromoprotein FP595 6108
14 1ZGO 1 A, B, C, D Red fluorescent protein drFP583 86600
15 4DXM 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
16 4Q7R 1 A, B LSSmOrange 86600
17 2QLI 1 A, B Fluorescent protein plum 301246
18 2ZO6 1 A CYAN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN (KCY) RESIDUES 1-218 496660
19 5LK4 1 A mScarlet Red Fluorescent Protein mScarlet 86600
20 2GW3 1 A, B Kaede 196280
21 2C9J 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN FP512 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN62 AND GLY64 BACKBONE ATOMS AND COPLANAR TYR63 208460
22 3KCS 1 A PAmCherry1 protein 86600
23 4R6D 1 A GFP-like fluorescent chromoprotein cFP484 unp residues 44-258 86521
24 3NT3 1 A, B, C, D LSSmKate2 red fluorescent protein 32630
25 2OTE 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
26 5FHV 1 A mCherry-BME 86600
27 5OQ9 1 A Green to red photoconvertible GFP-like protein EosFP 46758
28 2ICR 1 A, B, C, D Red fluorescent protein zoanRFP 105402
29 4GOB 1 A, B, C, D Kaede-type Fluorescent Protein 32630
30 5OQA 1 A Green to red photoconvertible GFP-like protein EosFP 46758
31 2DDD 1 A, B photoconvertible fluorescent protein 102203
32 3U0N 1 A mRuby 6118
33 2H5R 1 A mStrawberry 86600
34 2DDC 1 A, B photoconvertible fluorescent protein 102203
35 2ZO7 1 A CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) RESIDUES 1-220 496660
36 3IP2 1 A Neptune red fluorescent protein 6118
37 2VAD 1 A RED FLUORESCENT PROTEIN 86600
38 5EJU 1 A Reversibly photoswitching protein Dathail 32630
39 4DXI 1 A, B, C, D GREEN FLUORESCENT PROTEIN 32630
40 2VAE 1 A, B, C, D, E, F, G, H RED FLUORESCENT PROTEIN 86600
41 4EDS 1 A, B far-red fluorescent protein eqFP650 6118
42 5EB6 1 A Reversible photoswitching chromoprotein Dathail 32630
43 2A46 1 A GFP-like fluorescent chromoprotein amFP486 105399
44 3PJ5 1 A, B Red fluorescent protein eqFP578 6118
45 3LS3 1 A, B, C, D Padron0.9 46733
46 6DEJ 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
47 5EXU 1 A Reversibly photoswitching protein Dathail 32630
48 3U0M 1 A mRuby 6118
49 1XSS 1 A, B fluorescent protein 102203
50 3KCT 1 A PAmCherry1 protein 86600
51 4OJ0 1 A, B, C, D Fluorescent protein FP480 6118
52 5EB7 1 A Reversibly photoswitching chromoprotein Dathail 32630
53 3IR8 1 A, B Large stokes shift fluorescent protein 321802
54 4H3L 1 A, B Fluorescent protein plum 301246
55 2A47 1 A GFP-like fluorescent chromoprotein amFP486 105399
56 4KPI 1 A Reversibly photoswitchable red fluorescent protein rsTagRFP 32630
57 3NEZ 1 A, B, C, D mRojoA 86600
58 2Z1O 1 A, B, C, D Fluorescent protein Dronpa 301887
59 5LTP 1 A, B, C, D, E, F mNeonGreen Yellow-Green Fluorescent Protein mNeonGreen 7740
60 2ZMU 1 A Fluorescent protein 496660
61 3E5W 1 A, B, C, D Red fluorescent protein eqFP611 6118
62 4DXP 1 A LEA X121 GFP-LIKE PROTEINS 32630
63 3LSA 1 A, B, C, D Padron0.9 46733
64 3PJB 1 A, B Red fluorescent protein eqFP578 6118
65 4ZIN 1 A, B, C MCherry fluorescent protein 770
66 3BXA 1 A, B Far-red fluorescent protein mKate 6118
67 2IE2 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
68 3MGF 1 A, B, C, D Fluorescent protein 496660
69 4DXN 1 A LEAST EVOLVED ANCESTOR (LEA) GFP-LIKE PROTEINS 32630
70 2QLG 1 A Fluorescent protein plum 301246
71 2QLG 2 B Fluorescent protein plum 301246
72 5H89 1 A, B, C, D mRojoA fluorescent protein 86600
73 3U8A 1 A, B, C, D Fluorescent protein rsTagRFP 32630
74 6AA7 1 A, B Fluorescent protein 70779
75 5HZU 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
76 2RH7 1 A, B, C, D Green fluorescent protein 6136
77 3SVS 1 A, B, C, D, E, F, G, H mKate S158A/S143C 32630
78 2GX2 1 A, B, C, D, E, F, G, H, I, J, K, L fluorescent protein Dronpa Green fluorescent protein 301887
79 2OTB 1 A, B GFP-like fluorescent chromoprotein cFP484 86521
80 2OGR 1 A, B, C, D FLUORESCENT PROTEIN FP538 105402
81 5EXB 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein 51110
82 2VVH 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
83 2IOV 1 A, B, C, D Fluorescent protein Dronpa 301887
84 4EDO 1 A, B far-red fluorescent protein eqFP650 6118
85 3NF0 1 A Fluorescent protein plum 301246
86 5OOZ 1 A Green to red photoconvertible GFP-like protein EosFP 46758
87 2Z6Z 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
88 2IB5 1 A, B, C, D, E, F, G, H Chromo protein 58804
89 5OQE 1 A Green to red photoconvertible GFP-like protein EosFP 46758
90 3SVN 1 A, B, C, D mKate 32630
91 4TZA 1 A, B, C, D Fluorescent Protein 32630
92 3BX9 1 A, B Far-red fluorescent protein mKate 6118
93 2GX0 1 A, B, C, D fluorescent protein Dronpa Green fluorescent protein 301887
94 4Q9X 1 A GFP-like fluorescent chromoprotein cFP484 86521
95 4H3N 1 A Fluorescent protein plum 301246
96 2QLH 1 A, B Fluorescent protein plum 301246
97 3PJ7 1 A, B, C, D Red fluorescent protein eqFP578 6118
98 3SVR 1 A, B, C, D mkate S158A/S143C 32630
99 3TMR 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
100 2WHT 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
101 2POX 1 A, B, C, D Fluorescent protein Dronpa 301887
102 1GGX 1 A, B, C, D PROTEIN (FLUORESCENT PROTEIN FP583) RESIDUE CRQ 68 IS MADE FROM RESIDUES GLN 66, TYR 67 AND GLY 68. 86600
103 5FVG 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GFP-LIKE PROTEIN EOSFP 46758
104 1G7K 1 A, B, C, D FLUORESCENT PROTEIN FP583 86600
105 4LJC 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
106 1ZGQ 1 A, B, C, D, E, F, G, H Red fluorescent protein drFP583 86600
107 3SVO 1 A, B, C, D mKate S158A/S143C 32630
108 1ZUX 1 A, B, C, D green to red photoconvertible GPF-like protein EosFP 46758
109 5JVA 1 A, B, C, D TagRFP-T 32630
110 2P4M 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
111 4EMQ 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
112 4HQ8 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
113 3H1O 1 A, B Fluorescent protein FP480 6118
114 4DXQ 1 A LEA Q38A GFP-LIKE PROTEINS 32630
115 2A48 1 A GFP-like fluorescent chromoprotein amFP486 105399
116 4UTS 1 A, B, C, D FLUORESCENT PROTEIN DRONPA FLUORESCENT PROTEIN, RESIDUES 2-217 301887
117 3NT9 1 A, B, C, D LSSmKate1 red fluorescent protein 32630
118 5H88 1 A, B, C, D mRojoA fluorescent protein 86600
119 4Q7T 1 A, B PSmOrange 86600
120 2VVJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
121 4TZG 1 A, B, C, D, E, F, G, H Fluorescent Protein 32630
122 4HQC 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
123 2VVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
124 4PPK 1 A, B, C, D Monomeric Azami Green 32630
125 2ZMW 1 A, B, C, D Fluorescent protein 496660
126 2IB6 1 A, B, C, D, E, F, G, H Yellow mutant chromo protein 58804
127 2BTJ 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 2-((1E)-2-(5-IMIDAZOLYL)ETHENYL)-4-(P-HYDROXYBENZYLIDENE)-5-IMIDAZOLINONE CHROMOPHORE CONTAINED WITHIN PROTEIN AT POSITION 62-64 OF THE PROTEIN SEQUENCE 46758
128 2C9I 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN ASFP499 CHROMOPHORE\: AN IMIDAZOLINONE RING FROM THE CYCLIZATION BETWEEN GLN63 AND GLY65 AND COPLANAR TYR64 6108
129 1ZGP 1 A, B, C, D Red fluorescent protein drFP583 86600
130 3S05 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
131 4ZIO 1 A, B, C mCherry 86599
132 4R6B 1 A, B, C, D Green to red photoconvertible GFP-like protein EosFP 46758
133 3U8C 1 A, B, C, D Fluorescent protein rsTagRFP 32630
134 3CGL 1 A, B, C, D, E, F GFP-like fluorescent chromoprotein dsFP483 105400
135 3M22 1 A, B, C, D TagRFP 32630
136 3VIC 1 A, B, C, D, E, F, G, H GFP-like non-fluorescent chromoprotein 105610
137 2Z6Y 1 A, B, C, D Fluorescent protein Dronpa 301887
138 4HQ9 1 A, B, C, D, E, F Fluorescent protein Dronpa 301887
139 5HZS 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
140 2VZX 1 A, B, C, D, E, F, G, H GREEN FLUORESCENT PROTEIN 191210
141 2WHS 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
142 4H3M 1 A, B Fluorescent protein plum 301246
143 4KF4 1 A, B, C, D, E, F, G, H fluorescent protein sfCherry 32630
144 2PXS 1 A, B GFP-like fluorescent chromoprotein FP506 105402
145 2OJK 1 A, B GFP-like fluorescent chromoprotein FP506 105402
146 4IZN 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa 301887
147 2H8Q 1 A, B, C, D Red fluorescent protein drFP583 86600
148 4ZB1 1 A, B Blue chromoprotein, sgBP A tripeptide QYG chromophore 230562
149 3ZUF 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-218 301887
150 4OHS 1 A, B, C, D, E, F, G, H FAR-RED FLUORESCENT PROTEIN AQ143 6106
151 2ARL 1 A GFP-like non-fluorescent chromoprotein 105610
152 1XQM 1 A kindling fluorescent protein 6108
153 5H87 1 A, B, C, D mRojoA fluorescent protein 86600
154 5LTQ 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Green fluorescent protein blFP-Y3 Yellow Fluorescent Protein lanYFP 7740
155 4PPL 1 A, B, C, D Monomeric Azami Green 32630
156 3M24 1 A, B, C, D TagBFP 32630
157 5FVI 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
158 1YZW 1 A, B, C, D GFP-like non-fluorescent chromoprotein 175771
159 2PXW 1 A, B GFP-like fluorescent chromoprotein FP506 105402
160 3E5V 1 A Red fluorescent protein eqFP611 6118
161 3VK1 1 A GFP-like non-fluorescent chromoprotein 105610
162 1UIS 1 A, B red fluorescent protein FP611 6118
163 4JC2 1 A, B, C, D, E, F asFP504 40679
164 3ADF 1 A, B Monomeric Azami Green 46745
165 4KGE 1 A, B TagRFP675, red fluorescent protein 32630
166 4KGF 1 A, B TagRFP675, red fluorescent protein 32630
167 5EBJ 1 A photoswitching chromogenic protein 32630
168 3ZUJ 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA RESIDUES 2-217 301887
169 4PPJ 1 A, B, C, D Monomeric Azami Green 32630
170 1MOU 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
171 3ZUL 1 A, B, C, D, E, F FLUORESCENT PROTEIN DRONPA 301887
172 4OQW 1 A, B, C, D, E, F, G, H Fluorescent protein FP480 6118
173 5Y8R 1 A GFP-like fluorescent chromoprotein FP538 105402
174 5BQL 1 A, B, C, D Fluorescent protein cyOFP 562
175 2Z6X 1 A, B, C, D, E, F, G, H photochromic protein Dronpa 46733
176 3BXB 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
177 2FL1 1 A, B, C, D Red fluorescent protein zoanRFP 105402
178 3P8U 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
179 1XA9 1 A fluorescent protein FP538 105402
180 4DXO 1 A LEA X(6) GFP-LIKE PROTEINS 32630
181 3TMT 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
182 4LJD 1 A, B, D Green to red photoconvertible GPF-like protein EosFP 46758
183 4LJD 2 C Green to red photoconvertible GPF-like protein EosFP 46758
184 2V4E 1 A RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
185 2V4E 2 B RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
186 2V4E 3 C, D, E, F, G, H RED FLUORESCENT PROTEIN DRFP583 THIS IS AN ENGINEERED VARIANT OF DSRED 86600
187 1MOV 1 A GFP-like non-fluorescent chromoprotein RESIDUES 5-225 105610
188 4NWS 1 A, B fluorescent protein 32630
189 4LJB 1 A, B, C, D Green to red photoconvertible GPF-like protein EosFP 46758
190 5FVF 1 A, B, C, D GREEN TO RED PHOTOCONVERTIBLE GPF-LIKE PROTEIN EOSFP 46758
191 4KF5 2 C, D fluorescent protein sfCherry+GFP10-11 32630
192 3H1R 1 A Fluorescent protein FP480 6118
193 3SVU 1 A, B, C, D mkate S143C 32630
194 5Y8Q 1 A, B GFP-like fluorescent chromoprotein FP538 105402
195 4P76 1 A, B Photoconvertible fluorescent protein 102203
196 1XAE 1 A, B fluorescent protein FP538 105402
197 5DTL 1 A, B, C, D, E, F, G, H, I, J, K, L Green to red photoconvertible GPF-like protein EosFP 46758
198 6D38 1 A Fluorescent protein Dronpa 301887
199 6D39 1 A Fluorescent protein Dronpa 301887
200 3BXC 1 A, B, C, D, E, F, G, H Far-red fluorescent protein mKate 6118
201 2WHU 1 A, B, C, D LARGE STOKES SHIFT FLUORESCENT PROTEIN 321802
202 5HZT 1 A, B, C, D, E, F, G, H, I, J, K, L Fluorescent protein Dronpa UNP residues 2-218 301887
203 6B0B 4 D, H MCherry 86600
204 6BBO 4 D, H MCherry fluorescent protein 86600