Sequence Similarity Clusters for the Entities in PDB 3TWH

Entity #1 | Chains: A
Ribonuclease H protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 30 1142
95 % 18 31 1309 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 18 31 1329
70 % 18 31 1353
50 % 18 31 1403
40 % 18 31 1381
30 % 18 31 1377
Entity #2 | Chains: B
RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*AP*TP*(SDG)P*TP*CP*(SDG))-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures