Sequence Similarity Clusters for the Entities in PDB 3TWH

Entity #1 | Chains: A
Ribonuclease H protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 24 1166
95 % 18 31 1206 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 18 31 1235
70 % 18 31 1269
50 % 18 31 1320
40 % 18 31 1339
30 % 18 31 1313
Entity #2 | Chains: B
RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*AP*TP*(SDG)P*TP*CP*(SDG))-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.