Sequence Similarity Clusters for the Entities in PDB 3TGS

Entity #1 | Chains: A,B
HIV-1 clade C1086 gp120 core protein, length: 358 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 7996
95 % 3 9 3901 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 9 3939
70 % 87 126 177
50 % 87 126 221
40 % 87 126 240
30 % 87 129 248

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.