Sequence Similarity Clusters for the Entities in PDB 3TGQ

Entity #1 | Chains: A,B,C,D
HIV-1 YU2 gp120 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 3724
95 % 8 8 4515 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 8 8 4551
70 % 122 130 184
50 % 122 130 225
40 % 122 130 242
30 % 123 133 251

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures