Sequence Similarity Clusters for the Entities in PDB 3TGQ

Entity #1 | Chains: A,B,C,D
HIV-1 YU2 gp120 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 3404
95 % 8 8 4174 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 8 8 4197
70 % 118 126 179
50 % 118 126 218
40 % 118 126 240
30 % 119 129 245

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.