Sequence Similarity Clusters for the Entities in PDB 3TGQ

Entity #1 | Chains: A,B,C,D
HIV-1 YU2 gp120 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 3661
95 % 8 8 4448 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 8 8 4475
70 % 121 129 183
50 % 121 129 223
40 % 121 129 242
30 % 122 132 249

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures