Sequence Similarity Clusters for the Entities in PDB 3TGQ

Entity #1 | Chains: A,B,C,D
HIV-1 YU2 gp120 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 4214
95 % 8 8 4509 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 8 8 4550
70 % 139 180 135
50 % 139 180 164
40 % 139 180 177
30 % 140 183 194

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures