Sequence Similarity Clusters for the Entities in PDB 3TCL

Entity #1 | Chains: A,H
CH04 Heavy Chain Fab protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10161
95 % 1 4 10178 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 1 4 10063
70 % 380 2222 2
50 % 777 4587 1
40 % 777 4587 1
30 % 840 5392 1
Entity #2 | Chains: B,L
CH04 Light Chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20726
95 % 1 2 18021 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 110 693 3
70 % 379 2264 1
50 % 778 4587 1
40 % 778 4587 1
30 % 841 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TCL 1 A, H CH04 Heavy Chain Fab 9606
2 3U46 1 A, H CH04 Heavy chain Fab 9606
3 3U4B 1 H CH04 Heavy chain 9606
4 5ESZ 1 A, H CH04 Heavy Chain 9606