Sequence Similarity Clusters for the Entities in PDB 3TCL

Entity #1 | Chains: A,H
CH04 Heavy Chain Fab protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11347
95 % 1 4 10952 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 1 4 10879
70 % 454 2532 2
50 % 930 5225 1
40 % 1123 5883 1
30 % 1368 7321 1
Entity #2 | Chains: B,L
CH04 Light Chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22630
95 % 1 2 20250 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 151 783 2
70 % 453 2576 1
50 % 931 5225 1
40 % 1124 5883 1
30 % 1369 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TCL 1 A, H CH04 Heavy Chain Fab 9606
2 3U46 1 A, H CH04 Heavy chain Fab 9606
3 3U4B 1 H CH04 Heavy chain 9606
4 5ESZ 1 A, H CH04 Heavy Chain 9606