Sequence Similarity Clusters for the Entities in PDB 3TCL

Entity #1 | Chains: A,H
CH04 Heavy Chain Fab protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11568
95 % 1 4 11142 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 1 4 11063
70 % 464 2580 2
50 % 951 5323 1
40 % 1149 6003 1
30 % 1398 7460 1
Entity #2 | Chains: B,L
CH04 Light Chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23108
95 % 1 2 20689 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 155 811 2
70 % 462 2621 1
50 % 952 5323 1
40 % 1150 6003 1
30 % 1399 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TCL 1 A, H CH04 Heavy Chain Fab 9606
2 3U46 1 A, H CH04 Heavy chain Fab 9606
3 3U4B 1 H CH04 Heavy chain 9606
4 5ESZ 1 A, H CH04 Heavy Chain 9606