Sequence Similarity Clusters for the Entities in PDB 3TCL

Entity #1 | Chains: A,H
CH04 Heavy Chain Fab protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11297
95 % 1 4 10910 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 1 4 10842
70 % 447 2511 2
50 % 915 5180 1
40 % 1108 5834 1
30 % 1353 7269 1
Entity #2 | Chains: B,L
CH04 Light Chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22543
95 % 1 2 20167 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 152 780 2
70 % 446 2553 1
50 % 916 5180 1
40 % 1109 5834 1
30 % 1354 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TCL 1 A, H CH04 Heavy Chain Fab 9606
2 3U46 1 A, H CH04 Heavy chain Fab 9606
3 3U4B 1 H CH04 Heavy chain 9606
4 5ESZ 1 A, H CH04 Heavy Chain 9606