Sequence Similarity Clusters for the Entities in PDB 3TCL

Entity #1 | Chains: A,H
CH04 Heavy Chain Fab protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10088
95 % 1 4 10099 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 4 9984
70 % 377 2197 1
50 % 771 4537 1
40 % 771 4537 1
30 % 834 5342 1
Entity #2 | Chains: B,L
CH04 Light Chain Fab protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20573
95 % 1 2 17892 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.5
PDBFlex
90 % 108 683 3
70 % 313 1841 2
50 % 772 4537 1
40 % 772 4537 1
30 % 835 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TCL 1 A, H CH04 Heavy Chain Fab 9606
2 3U46 1 A, H CH04 Heavy chain Fab 9606
3 3U4B 1 H CH04 Heavy chain 9606
4 5ESZ 1 A, H CH04 Heavy Chain 9606