Sequence Similarity Clusters for the Entities in PDB 3T1Y

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 237 25
95 % 90 238 38
90 % 90 238 43
70 % 90 238 53
50 % 112 330 30
40 % 112 330 40
30 % 125 396 41
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 239 23
95 % 90 239 34
90 % 90 239 39
70 % 90 239 48
50 % 106 324 38
40 % 121 397 27
30 % 121 398 39
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 194 42
95 % 90 246 22
90 % 90 246 27
70 % 106 335 23
50 % 106 336 29
40 % 106 336 39
30 % 106 336 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 240 20
95 % 90 240 32
90 % 90 240 37
70 % 90 240 46
50 % 109 329 35
40 % 109 329 46
30 % 122 397 46
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 238 24
95 % 90 238 39
90 % 90 238 44
70 % 90 239 51
50 % 90 239 82
40 % 90 239 107
30 % 90 239 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 242 16
95 % 94 247 21
90 % 94 247 26
70 % 94 247 37
50 % 113 337 27
40 % 113 338 38
30 % 113 338 54
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 234 26
95 % 90 239 36
90 % 90 239 41
70 % 90 239 50
50 % 90 239 81
40 % 90 240 106
30 % 109 327 64
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 84 225
95 % 90 233 40
90 % 90 237 45
70 % 90 237 54
50 % 90 237 87
40 % 90 237 113
30 % 90 237 128
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 49 564
95 % 81 205 63
90 % 81 205 66
70 % 81 205 75
50 % 81 205 109
40 % 81 205 129
30 % 81 205 145
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 242 15
95 % 91 242 26
90 % 91 242 31
70 % 91 242 42
50 % 107 327 34
40 % 107 327 44
30 % 107 327 60
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 239 17
95 % 90 240 27
90 % 90 240 33
70 % 90 240 43
50 % 106 323 37
40 % 106 324 47
30 % 106 324 63
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 50 370
95 % 90 238 37
90 % 90 238 42
70 % 90 238 52
50 % 90 238 83
40 % 90 238 109
30 % 90 238 125
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 229 39
95 % 90 229 54
90 % 90 229 58
70 % 90 229 69
50 % 90 229 96
40 % 90 229 118
30 % 90 229 132
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 204 43
95 % 80 204 64
90 % 80 204 67
70 % 80 204 76
50 % 84 252 68
40 % 84 252 93
30 % 84 252 110
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 232 27
95 % 90 240 28
90 % 90 240 34
70 % 90 240 44
50 % 106 324 36
40 % 106 325 45
30 % 106 325 62
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 239 22
95 % 90 239 33
90 % 90 239 38
70 % 90 239 47
50 % 107 328 33
40 % 107 328 43
30 % 107 330 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 244 13
95 % 98 250 20
90 % 98 250 25
70 % 98 250 35
50 % 98 250 70
40 % 98 250 94
30 % 112 289 80
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 243 14
95 % 91 244 25
90 % 91 244 29
70 % 91 244 40
50 % 107 289 50
40 % 107 290 62
30 % 107 290 83
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 239 19
95 % 91 239 31
90 % 91 243 30
70 % 91 243 41
50 % 109 330 31
40 % 110 332 41
30 % 124 401 37
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 90 190
95 % 90 239 35
90 % 90 239 40
70 % 90 239 49
50 % 106 324 39
40 % 106 324 49
30 % 119 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.