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An Information Portal to 111558 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 217 36
95% 79 218 51
90% 79 218 55
70% 79 218 67
50% 101 306 31
40% 101 306 42
30% 114 368 40
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 219 34
95% 79 219 47
90% 79 219 51
70% 79 219 62
50% 95 300 42
40% 110 369 30
30% 110 370 38
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 182 46
95% 79 226 39
90% 79 226 43
70% 95 311 22
50% 95 312 30
40% 95 312 41
30% 95 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 220 32
95% 79 220 45
90% 79 220 49
70% 79 220 60
50% 98 305 39
40% 98 305 50
30% 111 369 44
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 218 35
95% 79 218 52
90% 79 218 56
70% 79 219 65
50% 79 219 92
40% 79 219 114
30% 79 219 128
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 222 29
95% 83 227 36
90% 83 227 40
70% 83 227 52
50% 102 313 29
40% 102 314 39
30% 102 314 54
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 214 37
95% 79 219 49
90% 79 219 53
70% 79 219 64
50% 79 219 91
40% 79 220 113
30% 98 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 80 226
95% 79 213 56
90% 79 217 58
70% 79 217 69
50% 79 217 94
40% 79 217 116
30% 79 217 130
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 530
95% 74 194 64
90% 74 194 66
70% 74 194 79
50% 74 194 113
40% 74 194 131
30% 74 194 150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 222 28
95% 80 222 41
90% 80 222 46
70% 80 222 57
50% 96 303 38
40% 96 303 48
30% 96 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 219 30
95% 79 220 42
90% 79 220 47
70% 79 220 58
50% 95 299 41
40% 95 300 51
30% 95 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 371
95% 79 218 50
90% 79 218 54
70% 79 218 66
50% 79 218 93
40% 79 218 115
30% 79 218 129
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 209 40
95% 79 209 59
90% 79 209 62
70% 79 209 73
50% 79 209 100
40% 79 209 123
30% 79 209 135
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 193 45
95% 73 193 65
90% 73 193 67
70% 73 193 80
50% 77 237 77
40% 77 237 102
30% 77 237 121
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 212 38
95% 79 220 43
90% 79 220 48
70% 79 220 59
50% 95 300 40
40% 95 301 49
30% 95 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 219 33
95% 79 219 46
90% 79 219 50
70% 79 219 61
50% 96 304 37
40% 96 304 47
30% 96 306 63
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 224 25
95% 87 230 24
90% 87 230 29
70% 87 230 41
50% 87 230 83
40% 87 230 108
30% 101 269 80
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 223 27
95% 80 224 40
90% 80 224 44
70% 80 224 55
50% 96 267 51
40% 96 268 64
30% 96 268 83
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 219 31
95% 80 219 44
90% 80 223 45
70% 80 223 56
50% 98 306 35
40% 99 308 43
30% 113 373 37
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 89 180
95% 79 219 48
90% 79 219 52
70% 79 219 63
50% 95 300 43
40% 95 300 52
30% 108 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.