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An Information Portal to 108957 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 204 25
95% 70 205 45
90% 70 205 47
70% 70 205 57
50% 91 290 35
40% 91 290 45
30% 104 342 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 206 23
95% 70 206 41
90% 70 206 43
70% 70 206 52
50% 85 284 41
40% 100 343 34
30% 100 344 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 172 33
95% 70 213 31
90% 70 213 34
70% 85 295 24
50% 85 296 34
40% 85 296 44
30% 85 296 67
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 207 20
95% 70 207 39
90% 70 207 41
70% 70 207 50
50% 88 289 39
40% 88 289 49
30% 101 343 48
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 205 24
95% 70 205 46
90% 70 205 48
70% 70 206 55
50% 70 206 85
40% 70 206 110
30% 70 206 129
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 209 18
95% 74 214 29
90% 74 214 32
70% 74 214 42
50% 92 297 33
40% 92 298 43
30% 92 298 65
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 201 29
95% 70 206 43
90% 70 206 45
70% 70 206 54
50% 70 206 84
40% 70 207 109
30% 88 287 74
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 80 223
95% 70 200 47
90% 70 204 49
70% 70 204 58
50% 70 204 87
40% 70 204 112
30% 70 204 131
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 515
95% 65 180 55
90% 65 180 57
70% 65 180 72
50% 65 180 119
40% 65 180 143
30% 65 180 159
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 209 17
95% 71 209 33
90% 71 209 37
70% 71 209 46
50% 86 287 38
40% 86 287 48
30% 86 287 71
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 206 21
95% 70 207 35
90% 70 207 38
70% 70 207 47
50% 85 283 43
40% 85 284 51
30% 85 284 73
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 361
95% 70 205 44
90% 70 205 46
70% 70 205 56
50% 70 205 86
40% 70 205 111
30% 70 205 130
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 196 32
95% 70 196 51
90% 70 196 53
70% 70 196 64
50% 70 196 97
40% 70 196 120
30% 70 196 143
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 179 36
95% 64 179 56
90% 64 179 59
70% 64 179 73
50% 67 220 77
40% 67 220 100
30% 67 220 120
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 199 30
95% 70 207 37
90% 70 207 40
70% 70 207 49
50% 85 284 40
40% 85 285 50
30% 85 285 72
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 206 22
95% 70 206 40
90% 70 206 42
70% 70 206 51
50% 86 288 37
40% 86 288 47
30% 86 290 69
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 211 15
95% 78 217 28
90% 78 217 31
70% 78 217 41
50% 78 217 78
40% 78 217 102
30% 92 256 85
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 210 16
95% 71 211 32
90% 71 211 35
70% 71 211 44
50% 87 254 51
40% 87 255 67
30% 87 255 88
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 206 19
95% 71 206 38
90% 71 210 36
70% 71 210 45
50% 88 290 36
40% 89 292 46
30% 103 347 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 90 160
95% 70 206 42
90% 70 206 44
70% 70 206 53
50% 85 284 42
40% 85 284 52
30% 98 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.