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An Information Portal to 108607 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 197 29
95% 69 198 46
90% 69 198 48
70% 69 198 61
50% 90 283 35
40% 90 283 45
30% 103 334 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 199 26
95% 69 199 40
90% 69 199 42
70% 69 199 54
50% 84 277 41
40% 99 335 35
30% 99 336 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 166 36
95% 69 206 32
90% 69 206 34
70% 84 288 24
50% 84 289 34
40% 84 289 44
30% 84 289 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 200 23
95% 69 200 38
90% 69 200 40
70% 69 200 51
50% 87 282 39
40% 87 282 50
30% 100 335 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 198 27
95% 69 198 47
90% 69 198 49
70% 69 199 57
50% 69 199 90
40% 69 199 113
30% 69 199 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 202 21
95% 73 207 31
90% 73 207 33
70% 73 207 43
50% 91 290 33
40% 91 291 43
30% 91 291 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 194 30
95% 69 199 42
90% 69 199 44
70% 69 199 56
50% 69 199 89
40% 69 200 112
30% 87 280 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 80 223
95% 69 193 50
90% 69 197 50
70% 69 197 62
50% 69 197 94
40% 69 197 117
30% 69 197 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 513
95% 64 174 72
90% 64 174 76
70% 64 174 90
50% 64 174 131
40% 64 174 149
30% 64 174 164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 202 20
95% 70 202 34
90% 70 202 37
70% 70 202 47
50% 85 280 38
40% 85 280 49
30% 85 280 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 199 24
95% 69 200 35
90% 69 200 38
70% 69 200 48
50% 84 276 43
40% 84 277 52
30% 84 277 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 360
95% 69 198 45
90% 69 198 47
70% 69 198 60
50% 69 198 93
40% 69 198 115
30% 69 198 138
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 189 32
95% 69 189 52
90% 69 189 55
70% 69 189 68
50% 69 189 112
40% 69 189 135
30% 69 189 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 173 48
95% 63 173 73
90% 63 173 77
70% 63 173 92
50% 66 214 78
40% 66 214 102
30% 66 214 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 192 31
95% 69 200 36
90% 69 200 39
70% 69 200 49
50% 84 277 40
40% 84 278 51
30% 84 278 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 199 25
95% 69 199 39
90% 69 199 41
70% 69 199 52
50% 85 281 37
40% 85 281 48
30% 85 283 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 204 18
95% 77 210 30
90% 77 210 32
70% 77 210 42
50% 77 210 83
40% 77 210 107
30% 91 249 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 203 19
95% 70 204 33
90% 70 204 35
70% 70 204 44
50% 86 247 56
40% 86 248 71
30% 86 248 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 199 22
95% 70 199 37
90% 70 203 36
70% 70 203 45
50% 87 283 36
40% 88 285 46
30% 102 339 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 90 159
95% 69 199 41
90% 69 199 43
70% 69 199 55
50% 84 277 42
40% 84 277 54
30% 97 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.