3T1Y

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin


Sequence Similarity Clusters for the Entities in PDB 3T1Y

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 267 38
95 % 103 268 54
90 % 103 268 57
70 % 103 268 69
50 % 132 397 27
40 % 132 397 38
30 % 146 496 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 36
95 % 103 269 50
90 % 103 269 53
70 % 103 269 64
50 % 126 391 35
40 % 142 495 19
30 % 142 495 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 217 50
95 % 103 276 39
90 % 103 276 43
70 % 126 404 22
50 % 126 409 25
40 % 126 409 35
30 % 126 409 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 270 34
95 % 103 270 47
90 % 103 270 51
70 % 103 270 61
50 % 129 396 33
40 % 129 396 45
30 % 143 497 36
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 268 37
95 % 103 268 55
90 % 103 268 58
70 % 103 270 62
50 % 103 270 90
40 % 103 270 112
30 % 103 270 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 272 30
95 % 107 277 38
90 % 107 277 42
70 % 107 277 53
50 % 133 404 26
40 % 133 407 36
30 % 133 407 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 264 39
95 % 103 269 52
90 % 103 269 55
70 % 103 269 66
50 % 103 271 89
40 % 103 271 110
30 % 129 392 64
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 87 245
95 % 103 263 56
90 % 103 267 59
70 % 103 267 70
50 % 103 267 94
40 % 103 267 115
30 % 103 267 127
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 51 690
95 % 93 234 64
90 % 93 234 68
70 % 93 234 80
50 % 93 234 108
40 % 93 234 133
30 % 93 234 141
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 272 29
95 % 104 272 43
90 % 104 272 48
70 % 104 272 58
50 % 127 396 29
40 % 127 399 40
30 % 127 399 57
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 32
95 % 103 270 44
90 % 103 270 49
70 % 103 270 59
50 % 126 390 34
40 % 126 393 44
30 % 126 393 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 51 484
95 % 103 268 53
90 % 103 268 56
70 % 103 268 68
50 % 103 268 92
40 % 103 268 113
30 % 103 268 124
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 259 43
95 % 103 259 59
90 % 103 259 63
70 % 103 259 75
50 % 103 259 97
40 % 103 259 120
30 % 103 259 130
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 233 47
95 % 92 233 65
90 % 92 233 69
70 % 92 233 81
50 % 96 304 84
40 % 96 304 102
30 % 96 304 113
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 262 40
95 % 103 270 45
90 % 103 270 50
70 % 103 270 60
50 % 126 392 32
40 % 126 395 42
30 % 126 395 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 35
95 % 103 269 49
90 % 103 269 52
70 % 103 269 63
50 % 127 396 31
40 % 127 396 43
30 % 127 398 59
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 274 27
95 % 111 280 36
90 % 111 280 41
70 % 111 280 52
50 % 111 280 87
40 % 111 280 106
30 % 132 334 90
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 273 28
95 % 104 274 41
90 % 104 274 45
70 % 104 274 56
50 % 127 338 70
40 % 127 341 79
30 % 127 341 91
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 269 33
95 % 104 269 46
90 % 104 273 46
70 % 104 273 57
50 % 129 397 28
40 % 130 401 37
30 % 146 508 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 91 211
95 % 103 269 51
90 % 103 269 54
70 % 103 269 65
50 % 126 391 36
40 % 126 391 46
30 % 140 496 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.