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An Information Portal to 110790 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 218 36
95% 79 219 51
90% 79 219 55
70% 79 219 67
50% 100 306 33
40% 100 306 43
30% 113 360 42
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 220 34
95% 79 220 47
90% 79 220 51
70% 79 220 62
50% 94 300 42
40% 109 361 30
30% 109 362 41
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 183 46
95% 79 227 38
90% 79 227 42
70% 94 311 23
50% 94 312 32
40% 94 312 42
30% 94 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 221 32
95% 79 221 45
90% 79 221 49
70% 79 221 60
50% 97 305 38
40% 97 305 50
30% 110 361 47
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 219 35
95% 79 219 52
90% 79 219 56
70% 79 220 65
50% 79 220 92
40% 79 220 113
30% 79 220 126
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 223 29
95% 83 228 26
90% 83 228 31
70% 83 228 43
50% 101 313 29
40% 101 314 40
30% 101 314 55
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 215 37
95% 79 220 49
90% 79 220 53
70% 79 220 64
50% 79 220 91
40% 79 221 112
30% 97 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 80 224
95% 79 214 56
90% 79 218 58
70% 79 218 69
50% 79 218 94
40% 79 218 116
30% 79 218 128
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 525
95% 74 194 64
90% 74 194 66
70% 74 194 79
50% 74 194 111
40% 74 194 130
30% 74 194 150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 223 27
95% 80 223 41
90% 80 223 46
70% 80 223 57
50% 95 303 37
40% 95 303 48
30% 95 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 220 30
95% 79 221 42
90% 79 221 47
70% 79 221 58
50% 94 299 41
40% 94 300 51
30% 94 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 367
95% 79 219 50
90% 79 219 54
70% 79 219 66
50% 79 219 93
40% 79 219 114
30% 79 219 127
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 210 40
95% 79 210 59
90% 79 210 62
70% 79 210 73
50% 79 210 98
40% 79 210 120
30% 79 210 133
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 193 45
95% 73 193 65
90% 73 193 67
70% 73 193 80
50% 76 236 78
40% 76 236 99
30% 76 236 119
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 213 38
95% 79 221 43
90% 79 221 48
70% 79 221 59
50% 94 300 39
40% 94 301 49
30% 94 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 220 33
95% 79 220 46
90% 79 220 50
70% 79 220 61
50% 95 304 36
40% 95 304 47
30% 95 306 65
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 225 24
95% 87 231 24
90% 87 231 29
70% 87 231 41
50% 87 231 83
40% 87 231 105
30% 101 270 79
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 224 26
95% 80 225 40
90% 80 225 44
70% 80 225 55
50% 96 268 51
40% 96 269 62
30% 96 269 81
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 220 31
95% 80 220 44
90% 80 224 45
70% 80 224 56
50% 97 306 34
40% 98 308 44
30% 112 365 40
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 90 167
95% 79 220 48
90% 79 220 52
70% 79 220 63
50% 94 300 43
40% 94 300 52
30% 107 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.