POP-OUT | CLOSE

An Information Portal to 107620 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 196 28
95% 69 197 44
90% 69 197 46
70% 69 197 58
50% 90 280 35
40% 90 280 45
30% 103 331 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 198 24
95% 69 198 40
90% 69 198 42
70% 69 198 54
50% 84 274 42
40% 99 330 35
30% 99 330 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 165 35
95% 69 205 31
90% 69 205 33
70% 84 286 24
50% 84 286 34
40% 84 286 44
30% 84 286 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 199 21
95% 69 199 37
90% 69 199 39
70% 69 199 51
50% 87 279 39
40% 87 279 51
30% 100 331 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 197 25
95% 69 197 45
90% 69 197 47
70% 69 197 59
50% 69 197 92
40% 69 197 114
30% 69 197 137
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 201 19
95% 73 206 30
90% 73 206 32
70% 73 206 43
50% 91 287 33
40% 91 287 43
30% 91 287 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 193 29
95% 69 198 42
90% 69 198 44
70% 69 198 56
50% 69 198 90
40% 69 198 112
30% 87 277 75
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 80 222
95% 69 192 49
90% 69 196 48
70% 69 196 60
50% 69 196 93
40% 69 196 116
30% 69 196 139
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 505
95% 64 174 71
90% 64 174 75
70% 64 174 88
50% 64 174 128
40% 64 174 146
30% 64 174 164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 176 45
95% 64 176 67
90% 64 176 70
70% 64 176 83
50% 85 277 38
40% 85 277 48
30% 85 277 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 198 22
95% 69 199 34
90% 69 199 37
70% 69 199 48
50% 69 199 88
40% 84 274 53
30% 84 274 74
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 355
95% 69 197 43
90% 69 197 45
70% 69 197 57
50% 69 197 91
40% 69 197 113
30% 69 197 136
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 188 31
95% 69 188 51
90% 69 188 54
70% 69 188 66
50% 69 188 111
40% 69 188 133
30% 69 188 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 173 48
95% 63 173 72
90% 63 173 76
70% 63 173 90
50% 66 213 75
40% 66 213 102
30% 66 213 122
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 191 30
95% 69 199 35
90% 69 199 38
70% 69 199 49
50% 84 274 40
40% 84 275 52
30% 84 275 73
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 198 23
95% 69 198 39
90% 69 198 41
70% 69 198 53
50% 85 278 37
40% 85 278 47
30% 85 280 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 203 17
95% 77 209 29
90% 77 209 31
70% 77 209 42
50% 77 209 80
40% 77 209 106
30% 91 247 87
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 202 18
95% 70 203 32
90% 70 203 34
70% 70 203 45
50% 86 245 53
40% 86 246 70
30% 86 246 94
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 198 20
95% 70 198 36
90% 70 202 35
70% 70 202 46
50% 87 280 36
40% 88 282 46
30% 102 335 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 90 156
95% 69 198 41
90% 69 198 43
70% 69 198 55
50% 84 274 41
40% 84 274 54
30% 97 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.