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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 252 29
95% 71 254 48
90% 71 254 51
70% 71 254 63
50% 107 369 34
40% 107 369 48
30% 107 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 255 27
95% 71 255 44
90% 71 255 47
70% 71 255 59
50% 101 363 42
40% 105 403 39
30% 105 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 224 37
95% 71 262 36
90% 71 262 38
70% 101 375 24
50% 101 375 33
40% 101 375 47
30% 101 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 256 24
95% 71 256 42
90% 71 256 45
70% 71 256 57
50% 101 365 39
40% 101 365 53
30% 103 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 254 28
95% 71 254 49
90% 71 254 52
70% 71 254 64
50% 71 254 99
40% 71 254 124
30% 71 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 258 21
95% 75 263 35
90% 75 263 37
70% 75 263 48
50% 108 376 32
40% 108 376 45
30% 108 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 250 31
95% 71 255 46
90% 71 255 49
70% 71 255 61
50% 71 255 97
40% 71 255 122
30% 101 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 92 219
95% 71 249 51
90% 71 253 53
70% 71 253 65
50% 71 253 100
40% 71 253 126
30% 71 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 463
95% 66 221 64
90% 66 221 68
70% 66 221 81
50% 66 221 116
40% 66 221 144
30% 66 221 166
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 223 38
95% 66 223 63
90% 66 223 67
70% 66 223 80
50% 102 366 38
40% 102 366 52
30% 102 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 255 25
95% 71 256 39
90% 71 256 43
70% 71 256 55
50% 71 256 96
40% 101 363 55
30% 101 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 61 359
95% 71 254 47
90% 71 254 50
70% 71 254 62
50% 71 254 98
40% 71 254 123
30% 71 254 143
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 238 34
95% 71 238 55
90% 71 238 59
70% 71 238 71
50% 71 238 110
40% 71 238 133
30% 71 238 153
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 219 39
95% 65 219 66
90% 65 219 70
70% 65 219 83
50% 77 282 81
40% 77 282 101
30% 77 282 123
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 248 32
95% 71 256 40
90% 71 256 44
70% 71 256 56
50% 101 363 40
40% 101 364 54
30% 101 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 255 26
95% 71 255 43
90% 71 255 46
70% 71 255 58
50% 102 367 37
40% 102 367 51
30% 102 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 260 18
95% 79 266 34
90% 79 266 36
70% 79 266 47
50% 79 266 88
40% 79 266 112
30% 99 313 95
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 259 20
95% 72 260 37
90% 72 260 39
70% 72 260 51
50% 91 308 57
40% 91 309 74
30% 91 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 255 23
95% 72 255 41
90% 72 259 40
70% 72 259 52
50% 104 369 36
40% 105 371 49
30% 108 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 113 134
95% 71 255 45
90% 71 255 48
70% 71 255 60
50% 101 363 41
40% 101 363 56
30% 103 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.