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An Information Portal to 106858 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1Y
Sequence Clusters for the Sequence Entities in PDB 3T1Y
Entity #1: Chains: A - 16S rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 194 28
95% 67 195 46
90% 67 195 48
70% 67 195 59
50% 87 276 35
40% 87 276 45
30% 100 326 46
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 196 26
95% 67 196 42
90% 67 196 44
70% 67 196 55
50% 81 270 42
40% 96 325 36
30% 96 325 47
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 165 35
95% 67 203 31
90% 67 203 33
70% 81 282 24
50% 81 282 34
40% 81 282 44
30% 81 282 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 197 23
95% 67 197 38
90% 67 197 40
70% 67 197 52
50% 84 275 39
40% 84 275 51
30% 97 326 49
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 195 27
95% 67 195 47
90% 67 195 49
70% 67 195 60
50% 67 195 92
40% 67 195 116
30% 67 195 139
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 199 19
95% 71 204 30
90% 71 204 32
70% 71 204 44
50% 88 283 33
40% 88 283 43
30% 88 283 68
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 191 29
95% 67 196 44
90% 67 196 46
70% 67 196 57
50% 67 196 89
40% 67 196 114
30% 84 273 77
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 80 221
95% 67 190 49
90% 67 194 50
70% 67 194 61
50% 67 194 93
40% 67 194 117
30% 67 194 141
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 49 496
95% 62 172 70
90% 62 172 74
70% 62 172 88
50% 62 172 125
40% 62 172 146
30% 62 172 165
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 62 174 47
95% 62 174 69
90% 62 174 73
70% 62 174 87
50% 82 273 38
40% 82 273 49
30% 82 273 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 196 24
95% 67 197 35
90% 67 197 38
70% 67 197 50
50% 67 197 88
40% 81 270 53
30% 81 270 76
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 354
95% 67 195 45
90% 67 195 47
70% 67 195 58
50% 67 195 91
40% 67 195 115
30% 67 195 138
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 186 32
95% 67 186 51
90% 67 186 54
70% 67 186 66
50% 67 186 110
40% 67 186 133
30% 67 186 151
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 171 48
95% 61 171 72
90% 61 171 76
70% 61 171 90
50% 64 210 76
40% 64 210 101
30% 64 210 121
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 189 30
95% 67 197 36
90% 67 197 39
70% 67 197 51
50% 81 270 40
40% 81 271 52
30% 81 271 75
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 67 196 25
95% 67 196 40
90% 67 196 42
70% 67 196 54
50% 82 274 37
40% 82 274 48
30% 82 276 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 201 17
95% 75 207 29
90% 75 207 31
70% 75 207 42
50% 75 207 81
40% 75 207 108
30% 88 244 90
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 200 18
95% 68 201 33
90% 68 201 35
70% 68 201 46
50% 83 242 55
40% 83 243 71
30% 83 243 95
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 196 22
95% 68 196 37
90% 68 200 36
70% 68 200 47
50% 84 276 36
40% 85 278 46
30% 99 330 45
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 90 140
95% 67 196 43
90% 67 196 45
70% 67 196 56
50% 81 270 41
40% 81 270 54
30% 94 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.