3T1Y

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin


Sequence Similarity Clusters for the Entities in PDB 3T1Y

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 267 37
95 % 103 268 51
90 % 103 268 54
70 % 103 268 65
50 % 132 394 25
40 % 132 394 37
30 % 146 490 29
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 35
95 % 103 269 47
90 % 103 269 50
70 % 103 269 60
50 % 126 388 34
40 % 142 487 18
30 % 142 487 31
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 217 48
95 % 103 276 36
90 % 103 276 40
70 % 126 401 20
50 % 126 403 23
40 % 126 403 34
30 % 126 403 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 270 33
95 % 103 270 44
90 % 103 270 48
70 % 103 270 57
50 % 129 393 32
40 % 129 393 44
30 % 143 491 32
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 268 36
95 % 103 268 52
90 % 103 268 55
70 % 103 270 58
50 % 103 270 87
40 % 103 270 108
30 % 103 270 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 272 28
95 % 107 277 35
90 % 107 277 39
70 % 107 277 50
50 % 133 401 24
40 % 133 404 33
30 % 133 404 54
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 264 38
95 % 103 269 49
90 % 103 269 52
70 % 103 269 62
50 % 103 271 86
40 % 103 271 106
30 % 129 389 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 87 234
95 % 103 263 53
90 % 103 267 56
70 % 103 267 66
50 % 103 267 90
40 % 103 267 111
30 % 103 267 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 51 647
95 % 93 234 62
90 % 93 234 66
70 % 93 234 77
50 % 93 234 103
40 % 93 234 129
30 % 93 234 140
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 272 27
95 % 104 272 40
90 % 104 272 45
70 % 104 272 54
50 % 127 393 28
40 % 127 393 39
30 % 127 393 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 31
95 % 103 270 41
90 % 103 270 46
70 % 103 270 55
50 % 126 387 33
40 % 126 390 42
30 % 126 390 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 51 460
95 % 103 268 50
90 % 103 268 53
70 % 103 268 64
50 % 103 268 89
40 % 103 268 110
30 % 103 268 122
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 259 41
95 % 103 259 56
90 % 103 259 59
70 % 103 259 69
50 % 103 259 94
40 % 103 259 116
30 % 103 259 129
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 233 45
95 % 92 233 63
90 % 92 233 67
70 % 92 233 78
50 % 96 301 78
40 % 96 301 96
30 % 96 301 113
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 262 39
95 % 103 270 42
90 % 103 270 47
70 % 103 270 56
50 % 126 389 31
40 % 126 392 40
30 % 126 392 60
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 269 34
95 % 103 269 46
90 % 103 269 49
70 % 103 269 59
50 % 127 393 29
40 % 127 393 41
30 % 127 395 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 274 24
95 % 111 280 33
90 % 111 280 38
70 % 111 280 49
50 % 111 280 83
40 % 111 280 102
30 % 132 334 87
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 273 26
95 % 104 274 37
90 % 104 274 41
70 % 104 274 51
50 % 127 336 65
40 % 127 339 75
30 % 127 339 89
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 269 32
95 % 104 269 43
90 % 104 273 42
70 % 104 273 52
50 % 129 394 26
40 % 130 398 36
30 % 146 500 28
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 91 202
95 % 103 269 48
90 % 103 269 51
70 % 103 269 61
50 % 126 388 35
40 % 126 388 45
30 % 140 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.