3T1Y

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin


Sequence Similarity Clusters for the Entities in PDB 3T1Y

Entity #1 | Chains: A
16S rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 254 36
95 % 102 255 49
90 % 102 255 54
70 % 102 255 64
50 % 131 362 28
40 % 131 362 38
30 % 145 436 36
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 256 34
95 % 102 256 45
90 % 102 256 50
70 % 102 256 59
50 % 125 356 35
40 % 141 438 20
30 % 141 439 34
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 208 46
95 % 102 263 36
90 % 102 263 41
70 % 125 367 22
50 % 125 368 27
40 % 125 368 37
30 % 125 368 57
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 257 32
95 % 102 257 43
90 % 102 257 48
70 % 102 257 57
50 % 128 361 32
40 % 128 361 43
30 % 142 437 39
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 255 35
95 % 102 255 50
90 % 102 255 55
70 % 102 256 62
50 % 102 256 88
40 % 102 256 108
30 % 102 256 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 259 29
95 % 106 264 35
90 % 106 264 40
70 % 106 264 50
50 % 132 369 26
40 % 132 370 36
30 % 132 370 56
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 251 37
95 % 102 256 47
90 % 102 256 52
70 % 102 256 61
50 % 102 256 87
40 % 102 257 107
30 % 128 359 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 87 225
95 % 102 250 51
90 % 102 254 56
70 % 102 254 66
50 % 102 254 90
40 % 102 254 111
30 % 102 254 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 51 616
95 % 92 221 64
90 % 92 221 69
70 % 92 221 79
50 % 92 221 111
40 % 92 221 132
30 % 92 221 143
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 259 27
95 % 103 259 38
90 % 103 259 44
70 % 103 259 53
50 % 126 359 31
40 % 126 359 41
30 % 126 359 59
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 256 30
95 % 102 257 39
90 % 102 257 45
70 % 102 257 54
50 % 125 355 34
40 % 125 356 44
30 % 125 356 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 51 384
95 % 102 255 48
90 % 102 255 53
70 % 102 255 63
50 % 102 255 89
40 % 102 255 110
30 % 102 255 122
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 246 39
95 % 102 246 54
90 % 102 246 59
70 % 102 246 69
50 % 102 246 95
40 % 102 246 118
30 % 102 246 131
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 220 45
95 % 91 220 65
90 % 91 220 70
70 % 91 220 80
50 % 95 276 78
40 % 95 276 100
30 % 95 276 112
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 249 38
95 % 102 257 40
90 % 102 257 46
70 % 102 257 55
50 % 125 356 33
40 % 125 357 42
30 % 125 357 61
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 256 33
95 % 102 256 44
90 % 102 256 49
70 % 102 256 58
50 % 126 360 30
40 % 126 360 40
30 % 126 362 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 261 25
95 % 110 267 34
90 % 110 267 37
70 % 110 267 46
50 % 110 267 84
40 % 110 267 103
30 % 131 313 77
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 260 26
95 % 103 261 37
90 % 103 261 42
70 % 103 261 51
50 % 126 313 54
40 % 126 314 68
30 % 126 314 89
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 256 31
95 % 103 256 42
90 % 103 260 43
70 % 103 260 52
50 % 128 362 29
40 % 129 364 39
30 % 145 443 33
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 91 198
95 % 102 256 46
90 % 102 256 51
70 % 102 256 60
50 % 125 356 36
40 % 125 356 46
30 % 139 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.