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An Information Portal to 111749 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1H
Sequence Clusters for the Sequence Entities in PDB 3T1H
Entity #1: Chains: A - 16s rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 217 36
95% 141 218 51
90% 141 218 55
70% 141 218 66
50% 168 306 31
40% 168 306 42
30% 186 368 40
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 219 34
95% 141 219 47
90% 141 219 51
70% 141 219 61
50% 162 300 42
40% 182 369 30
30% 182 370 38
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 182 46
95% 141 226 39
90% 141 226 43
70% 162 311 22
50% 162 312 30
40% 162 312 41
30% 162 312 57
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 220 32
95% 141 220 45
90% 141 220 49
70% 141 220 59
50% 165 305 39
40% 165 305 50
30% 183 369 44
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 218 35
95% 141 218 52
90% 141 218 56
70% 141 219 64
50% 141 219 92
40% 141 219 114
30% 141 219 128
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 222 29
95% 145 227 36
90% 145 227 40
70% 145 227 52
50% 169 313 29
40% 169 314 39
30% 169 314 54
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 214 37
95% 141 219 49
90% 141 219 53
70% 141 219 63
50% 141 219 91
40% 141 220 113
30% 165 303 70
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 80 226
95% 140 213 56
90% 141 217 58
70% 141 217 69
50% 141 217 94
40% 141 217 116
30% 141 217 130
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 49 532
95% 132 194 64
90% 132 194 67
70% 132 194 79
50% 132 194 113
40% 132 194 131
30% 132 194 150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 222 28
95% 142 222 41
90% 142 222 46
70% 142 222 56
50% 163 303 38
40% 163 303 48
30% 163 303 67
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 219 30
95% 141 220 42
90% 141 220 47
70% 141 220 57
50% 162 299 41
40% 162 300 51
30% 162 300 69
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 49 371
95% 141 218 50
90% 141 218 54
70% 141 218 65
50% 141 218 93
40% 141 218 115
30% 141 218 129
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 209 40
95% 141 209 59
90% 141 209 62
70% 141 209 73
50% 141 209 100
40% 141 209 123
30% 141 209 135
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 193 45
95% 132 193 65
90% 132 193 68
70% 132 193 80
50% 138 237 77
40% 138 237 102
30% 138 237 121
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 212 38
95% 141 220 43
90% 141 220 48
70% 141 220 58
50% 162 300 40
40% 162 301 49
30% 162 301 68
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 219 33
95% 141 219 46
90% 141 219 50
70% 141 219 60
50% 163 304 37
40% 163 304 47
30% 163 306 63
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 224 25
95% 149 230 24
90% 149 230 29
70% 149 230 41
50% 149 230 83
40% 149 230 108
30% 166 269 80
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 223 27
95% 142 224 40
90% 142 224 44
70% 142 224 54
50% 162 267 51
40% 162 268 64
30% 162 268 83
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 219 31
95% 141 219 44
90% 142 223 45
70% 142 223 55
50% 165 306 35
40% 166 308 43
30% 185 373 37
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 89 181
95% 141 219 48
90% 141 219 52
70% 141 219 62
50% 162 300 43
40% 162 300 52
30% 180 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.