Sequence Similarity Clusters for the Entities in PDB 3T1H

Entity #1 | Chains: A
16s rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 253 35
95 % 171 254 48
90 % 171 254 53
70 % 171 254 63
50 % 205 359 28
40 % 205 359 38
30 % 225 432 35
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 255 33
95 % 171 255 43
90 % 171 255 48
70 % 171 255 57
50 % 199 353 35
40 % 221 434 20
30 % 221 435 33
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 207 46
95 % 171 262 35
90 % 171 262 40
70 % 199 364 22
50 % 199 365 27
40 % 199 365 37
30 % 199 365 56
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 256 31
95 % 171 256 41
90 % 171 256 46
70 % 171 256 55
50 % 202 358 32
40 % 202 358 43
30 % 222 433 38
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 254 34
95 % 171 254 49
90 % 171 254 54
70 % 171 255 60
50 % 171 255 86
40 % 171 255 107
30 % 171 255 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 258 27
95 % 175 263 34
90 % 175 263 39
70 % 175 263 49
50 % 206 366 26
40 % 206 367 36
30 % 206 367 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 250 36
95 % 171 255 45
90 % 171 255 50
70 % 171 255 59
50 % 171 255 85
40 % 171 256 106
30 % 202 356 61
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 87 224
95 % 170 249 51
90 % 171 253 55
70 % 171 253 64
50 % 171 253 88
40 % 171 253 109
30 % 171 253 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 51 608
95 % 154 220 63
90 % 154 220 68
70 % 154 220 78
50 % 154 220 108
40 % 154 220 131
30 % 154 220 142
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 258 26
95 % 172 258 37
90 % 172 258 43
70 % 172 258 52
50 % 200 356 31
40 % 200 356 41
30 % 200 356 58
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 255 28
95 % 171 256 38
90 % 171 256 44
70 % 171 256 53
50 % 199 352 34
40 % 199 353 44
30 % 199 353 60
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 373
95 % 171 254 47
90 % 171 254 52
70 % 171 254 62
50 % 171 254 87
40 % 171 254 108
30 % 171 254 121
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 245 38
95 % 171 245 53
90 % 171 245 58
70 % 171 245 68
50 % 171 245 93
40 % 171 245 117
30 % 171 245 131
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 154 219 44
95 % 154 219 64
90 % 154 219 69
70 % 154 219 79
50 % 160 273 78
40 % 160 273 100
30 % 160 273 112
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 248 37
95 % 171 256 39
90 % 171 256 45
70 % 171 256 54
50 % 199 353 33
40 % 199 354 42
30 % 199 354 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 255 32
95 % 171 255 42
90 % 171 255 47
70 % 171 255 56
50 % 200 357 30
40 % 200 357 40
30 % 200 359 57
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 260 24
95 % 179 266 33
90 % 179 266 36
70 % 179 266 45
50 % 179 266 83
40 % 179 266 102
30 % 203 312 77
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 172 259 25
95 % 172 260 36
90 % 172 260 41
70 % 172 260 50
50 % 199 312 52
40 % 199 313 64
30 % 199 313 85
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 255 30
95 % 171 255 40
90 % 172 259 42
70 % 172 259 51
50 % 202 359 29
40 % 203 361 39
30 % 224 438 32
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 91 197
95 % 171 255 44
90 % 171 255 49
70 % 171 255 58
50 % 199 353 36
40 % 199 353 45
30 % 219 429 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.