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An Information Portal to 105339 Biological Macromolecular Structures

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin
Sequence Clustering and Redundancy Reduction Results
3T1H
Sequence Clusters for the Sequence Entities in PDB 3T1H
Entity #1: Chains: A - 16s rRNA rna, length: 1513 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 187 28
95% 119 188 47
90% 119 188 50
70% 119 188 60
50% 144 269 34
40% 144 269 45
30% 144 274 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 189 26
95% 119 189 43
90% 119 189 46
70% 119 189 56
50% 138 263 41
40% 158 316 35
30% 158 316 45
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 158 35
95% 119 196 35
90% 119 196 37
70% 138 275 24
50% 138 275 33
40% 138 275 44
30% 138 275 69
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 190 23
95% 119 190 41
90% 119 190 44
70% 119 190 54
50% 141 268 38
40% 141 268 51
30% 159 317 48
Entity #14: Chains: N - 30S ribosomal protein S14 type Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 188 27
95% 119 188 48
90% 119 188 51
70% 119 188 61
50% 119 188 94
40% 119 188 119
30% 119 188 142
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 192 21
95% 123 197 33
90% 123 197 35
70% 123 197 47
50% 145 276 32
40% 145 276 43
30% 145 276 66
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 184 29
95% 119 189 45
90% 119 189 48
70% 119 189 58
50% 119 189 92
40% 119 189 117
30% 141 266 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 79 222
95% 118 183 49
90% 119 187 52
70% 119 187 62
50% 119 187 95
40% 119 187 120
30% 119 187 143
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 49 491
95% 112 168 61
90% 112 168 64
70% 112 168 80
50% 112 168 117
40% 112 168 139
30% 112 168 161
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 170 37
95% 112 170 59
90% 112 170 63
70% 112 170 78
50% 139 266 37
40% 139 266 50
30% 139 266 73
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 189 24
95% 119 190 38
90% 119 190 42
70% 119 190 52
50% 119 190 91
40% 138 263 54
30% 138 263 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 48 365
95% 119 188 46
90% 119 188 49
70% 119 188 59
50% 119 188 93
40% 119 188 118
30% 119 188 141
Entity #21: Chains: V - 30S ribosomal protein Thx protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 179 34
95% 119 179 54
90% 119 179 56
70% 119 179 69
50% 119 179 105
40% 119 179 132
30% 119 179 151
Entity #22: Chains: W - mRNA A-site fragment rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - tRNA ASL human Lys3 rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 166 38
95% 111 166 63
90% 111 166 66
70% 111 166 82
50% 116 205 77
40% 116 205 101
30% 116 205 120
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 182 31
95% 119 190 39
90% 119 190 43
70% 119 190 53
50% 138 263 39
40% 138 264 52
30% 138 264 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 189 25
95% 119 189 42
90% 119 189 45
70% 119 189 55
50% 139 267 36
40% 139 267 49
30% 139 269 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 194 19
95% 127 200 29
90% 127 200 30
70% 127 200 45
50% 127 200 86
40% 127 200 108
30% 143 237 93
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 193 20
95% 120 194 36
90% 120 194 38
70% 120 194 50
50% 139 235 56
40% 139 236 73
30% 139 236 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 189 22
95% 119 189 40
90% 120 193 39
70% 120 193 51
50% 141 269 35
40% 142 271 46
30% 161 321 44
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 87 159
95% 119 189 44
90% 119 189 47
70% 119 189 57
50% 138 263 40
40% 138 263 55
30% 156 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.