3T1H

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin


Sequence Similarity Clusters for the Entities in PDB 3T1H

Entity #1 | Chains: A
16s rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 267 37
95 % 175 268 51
90 % 175 268 54
70 % 175 268 65
50 % 209 395 25
40 % 209 395 37
30 % 234 494 30
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 269 35
95 % 175 269 47
90 % 175 269 50
70 % 175 269 60
50 % 203 389 34
40 % 230 491 18
30 % 230 491 31
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 217 48
95 % 175 276 36
90 % 175 276 40
70 % 203 402 20
50 % 203 407 23
40 % 203 407 33
30 % 203 407 54
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 270 33
95 % 175 270 44
90 % 175 270 48
70 % 175 270 57
50 % 206 394 31
40 % 206 394 43
30 % 231 495 33
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 268 36
95 % 175 268 52
90 % 175 268 55
70 % 175 270 58
50 % 175 270 87
40 % 175 270 108
30 % 175 270 120
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 272 29
95 % 179 277 35
90 % 179 277 39
70 % 179 277 50
50 % 210 402 24
40 % 210 405 34
30 % 210 405 55
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 264 38
95 % 175 269 49
90 % 175 269 52
70 % 175 269 62
50 % 175 271 86
40 % 175 271 106
30 % 206 390 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 87 235
95 % 174 263 53
90 % 175 267 56
70 % 175 267 66
50 % 175 267 90
40 % 175 267 111
30 % 175 267 123
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 51 666
95 % 158 234 62
90 % 158 234 66
70 % 158 234 77
50 % 158 234 103
40 % 158 234 129
30 % 158 234 140
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 272 28
95 % 176 272 40
90 % 176 272 45
70 % 176 272 54
50 % 204 394 28
40 % 204 397 39
30 % 204 397 56
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 269 31
95 % 175 270 41
90 % 175 270 46
70 % 175 270 55
50 % 203 388 33
40 % 203 391 42
30 % 203 391 61
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 465
95 % 175 268 50
90 % 175 268 53
70 % 175 268 64
50 % 175 268 89
40 % 175 268 110
30 % 175 268 122
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 259 42
95 % 175 259 56
90 % 175 259 60
70 % 175 259 69
50 % 175 259 94
40 % 175 259 116
30 % 175 259 129
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 233 45
95 % 158 233 63
90 % 158 233 67
70 % 158 233 78
50 % 164 302 80
40 % 164 302 97
30 % 164 302 113
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 173 262 39
95 % 175 270 42
90 % 175 270 47
70 % 175 270 56
50 % 203 390 30
40 % 203 393 40
30 % 203 393 59
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 269 34
95 % 175 269 46
90 % 175 269 49
70 % 175 269 59
50 % 204 394 29
40 % 204 394 41
30 % 204 396 58
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 274 26
95 % 183 280 33
90 % 183 280 38
70 % 183 280 49
50 % 183 280 84
40 % 183 280 103
30 % 207 334 88
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 273 27
95 % 176 274 38
90 % 176 274 42
70 % 176 274 52
50 % 203 336 65
40 % 203 339 76
30 % 203 339 91
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 269 32
95 % 175 269 43
90 % 176 273 43
70 % 176 273 53
50 % 206 395 26
40 % 207 399 35
30 % 234 504 28
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 91 204
95 % 175 269 48
90 % 175 269 51
70 % 175 269 61
50 % 203 389 35
40 % 203 389 45
30 % 228 492 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.