3T1H

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin


Sequence Similarity Clusters for the Entities in PDB 3T1H

Entity #1 | Chains: A
16s rRNA rna, length: 1513 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 269 39
95 % 177 270 53
90 % 177 270 58
70 % 177 270 68
50 % 211 421 26
40 % 211 421 38
30 % 238 528 32
Entity #11 | Chains: K
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 271 35
95 % 177 271 49
90 % 177 271 54
70 % 177 271 64
50 % 205 415 32
40 % 234 537 19
30 % 234 537 31
Entity #12 | Chains: L
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 217 51
95 % 177 278 39
90 % 177 278 44
70 % 205 422 19
50 % 205 432 24
40 % 205 432 35
30 % 205 432 55
Entity #13 | Chains: M
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 272 33
95 % 177 272 46
90 % 177 272 51
70 % 177 272 62
50 % 208 419 31
40 % 208 419 43
30 % 235 527 36
Entity #14 | Chains: N
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 270 36
95 % 177 270 54
90 % 177 270 59
70 % 177 279 54
50 % 177 279 90
40 % 177 279 113
30 % 177 279 123
Entity #15 | Chains: O
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 274 30
95 % 181 279 38
90 % 181 279 43
70 % 181 279 53
50 % 212 428 25
40 % 212 433 34
30 % 212 433 54
Entity #16 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 266 41
95 % 177 271 51
90 % 177 271 56
70 % 177 271 66
50 % 177 278 91
40 % 177 278 114
30 % 208 413 63
Entity #17 | Chains: Q
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 87 258
95 % 176 265 56
90 % 177 269 60
70 % 177 269 69
50 % 177 269 94
40 % 177 269 117
30 % 177 269 128
Entity #18 | Chains: R
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 51 719
95 % 160 236 65
90 % 160 236 69
70 % 160 236 81
50 % 160 236 111
40 % 160 236 135
30 % 160 236 144
Entity #19 | Chains: S
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 274 29
95 % 178 274 42
90 % 178 274 48
70 % 178 274 58
50 % 206 421 28
40 % 206 424 40
30 % 206 424 57
Entity #2 | Chains: B
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 271 31
95 % 177 272 43
90 % 177 272 49
70 % 177 272 59
50 % 205 409 36
40 % 205 414 45
30 % 205 414 62
Entity #20 | Chains: T
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 51 524
95 % 177 270 52
90 % 177 270 57
70 % 177 270 67
50 % 177 270 93
40 % 177 270 116
30 % 177 270 127
Entity #21 | Chains: V
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 261 43
95 % 177 261 59
90 % 177 261 63
70 % 177 261 74
50 % 177 261 98
40 % 177 261 121
30 % 177 261 133
Entity #22 | Chains: W
mRNA A-site fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: X
tRNA ASL human Lys3 rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 235 48
95 % 160 235 66
90 % 160 235 70
70 % 160 235 82
50 % 166 309 84
40 % 166 309 103
30 % 166 309 116
Entity #4 | Chains: D
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 264 42
95 % 177 272 44
90 % 177 272 50
70 % 177 272 60
50 % 205 416 29
40 % 205 421 41
30 % 205 421 58
Entity #5 | Chains: E
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 271 34
95 % 177 271 48
90 % 177 271 53
70 % 177 271 63
50 % 206 417 30
40 % 206 417 42
30 % 206 419 60
Entity #6 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 276 27
95 % 185 282 37
90 % 185 282 42
70 % 185 282 51
50 % 185 282 88
40 % 185 282 110
30 % 209 355 95
Entity #7 | Chains: G
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 275 28
95 % 178 276 41
90 % 178 276 46
70 % 178 276 56
50 % 205 356 66
40 % 205 361 84
30 % 205 361 96
Entity #8 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 271 32
95 % 177 271 45
90 % 178 275 47
70 % 178 275 57
50 % 208 421 27
40 % 209 427 37
30 % 238 542 30
Entity #9 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 91 220
95 % 177 271 50
90 % 177 271 55
70 % 177 271 65
50 % 205 411 35
40 % 205 411 48
30 % 232 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.