Sequence Similarity Clusters for the Entities in PDB 3SN6

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34053
95 % 16 20 2909 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 16 20 2954
70 % 16 20 2917
50 % 16 20 2881
40 % 80 97 360
30 % 82 99 351
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 30 1187
95 % 29 35 1354 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 29 35 1381
70 % 29 35 1399
50 % 30 36 1375
40 % 30 38 1325
30 % 30 38 1301
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 25 1746
95 % 19 25 2286
90 % 19 25 2351
70 % 19 25 2347
50 % 19 25 2324
40 % 19 25 2312
30 % 19 25 2208
Entity #4 | Chains: R
Endolysin,Beta-2 adrenergic receptor protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51389
95 % 1 1 37922
90 % 4 6 9994
70 % 4 6 9491
50 % 4 6 8594
40 % 4 6 7876
30 % 4 6 6956
Entity #5 | Chains: N
Camelid antibody VHH fragment protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28914
95 % 1 3 23992
90 % 1 3 23209
70 % 326 379 9
50 % 471 576 7
40 % 756 929 5
30 % 840 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.