Sequence Similarity Clusters for the Entities in PDB 3SN6

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32998
95 % 16 20 2819 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.5
PDBFlex
90 % 16 20 2864
70 % 16 20 2834
50 % 16 20 2808
40 % 80 97 343
30 % 82 99 335
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 30 1135
95 % 29 35 1322 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 29 35 1346
70 % 29 35 1362
50 % 30 36 1338
40 % 30 38 1284
30 % 30 38 1266
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 1680
95 % 19 25 2211 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 19 25 2278
70 % 19 25 2275
50 % 19 25 2250
40 % 19 25 2237
30 % 19 25 2143
Entity #4 | Chains: R
Endolysin,Beta-2 adrenergic receptor protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49977
95 % 1 1 36888
90 % 4 6 9689
70 % 4 6 9206
50 % 4 6 8341
40 % 4 6 7653
30 % 4 6 6756
Entity #5 | Chains: N
Camelid antibody VHH fragment protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28009
95 % 1 3 23239
90 % 1 3 22490
70 % 301 348 9
50 % 438 536 8
40 % 719 882 5
30 % 802 1008 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.