Sequence Similarity Clusters for the Entities in PDB 3SN6

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34849
95 % 16 21 2833 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 16 21 2878
70 % 16 21 2857
50 % 16 21 2819
40 % 80 98 387
30 % 82 100 373
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 34 1059
95 % 32 39 1236 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 32 39 1265
70 % 32 39 1295
50 % 33 40 1283
40 % 33 42 1243
30 % 33 42 1214
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 29 1486
95 % 22 29 1994
90 % 22 29 2041
70 % 22 29 2055
50 % 22 29 2061
40 % 22 29 2055
30 % 22 29 1976
Entity #4 | Chains: R
Endolysin,Beta-2 adrenergic receptor protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52487
95 % 1 1 38692
90 % 4 6 10206
70 % 4 6 9687
50 % 4 6 8774
40 % 4 6 8047
30 % 4 6 7099
Entity #5 | Chains: N
Camelid antibody VHH fragment protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 23577
95 % 1 4 20218
90 % 1 4 19659
70 % 339 397 9
50 % 484 594 7
40 % 769 948 5
30 % 855 1077 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures