Sequence Similarity Clusters for the Entities in PDB 3SN6

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 18440
95 % 17 22 2782 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 17 22 2895
70 % 17 22 2859
50 % 17 24 2437
40 % 83 103 383
30 % 83 103 386
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 39 1064
95 % 33 41 1214 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 33 41 1231
70 % 33 41 1260
50 % 34 42 1269
40 % 34 42 1262
30 % 34 42 1263
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 31 1543
95 % 23 31 1816
90 % 23 31 1856
70 % 23 31 1871
50 % 23 31 1908
40 % 23 31 1897
30 % 23 31 1816
Entity #4 | Chains: R
Endolysin,Beta-2 adrenergic receptor protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52057
95 % 1 1 42942
90 % 4 6 11096
70 % 4 6 10250
50 % 4 6 9234
40 % 4 6 8357
30 % 4 6 7233
Entity #5 | Chains: N
Camelid antibody VHH fragment protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 21673
95 % 1 4 19485
90 % 1 4 18964
70 % 351 409 9
50 % 494 609 6
40 % 4800 5756 1
30 % 5991 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures