Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 885
95 % 12 52 432
90 % 12 52 458
70 % 19 120 165
50 % 19 120 196
40 % 19 120 212
30 % 19 123 222
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11007
95 % 1 4 10701
90 % 1 4 10546
70 % 408 1866 1
50 % 838 3846 1
40 % 838 3847 1
30 % 916 4574 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11184
95 % 1 4 10840
90 % 1 4 10666
70 % 333 1583 3
50 % 839 3846 1
40 % 839 3847 1
30 % 917 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.