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Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE9
Sequence Clusters for the Sequence Entities in PDB 3SE9
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 24 968
95% 11 47 496
90% 11 47 521
70% 17 75 271
50% 17 75 306
40% 17 75 335
30% 17 75 344
Entity #2: Chains: H - Heavy chain of antibody VRC-PG04 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 10113
95% 1 4 9875
90% 1 4 9753
70% 356 1663 1
50% 731 3439 1
40% 731 3440 1
30% 796 4057 1
Entity #3: Chains: L - Light chain of antibody VRC-PG04 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 10284
95% 1 4 10006
90% 1 4 9865
70% 294 1440 3
50% 732 3439 1
40% 732 3440 1
30% 797 4057 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.