Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 905
95 % 12 53 440
90 % 12 53 468
70 % 19 121 167
50 % 19 121 199
40 % 19 121 218
30 % 19 124 223
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11323
95 % 1 4 10997
90 % 1 4 10836
70 % 429 1938 1
50 % 880 3997 1
40 % 880 3998 1
30 % 958 4727 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11507
95 % 1 4 11137
90 % 1 4 10962
70 % 350 1642 3
50 % 881 3997 1
40 % 881 3998 1
30 % 959 4727 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.