Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 29 1030
95 % 12 56 553 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 12 56 582
70 % 19 128 181
50 % 19 128 223
40 % 19 128 241
30 % 19 131 249
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12869
95 % 1 4 12393 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 4 12211
70 % 507 2311 2
50 % 1048 4781 1
40 % 1048 4781 1
30 % 1151 5635 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13074
95 % 1 4 12555 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 4 12346
70 % 507 2362 1
50 % 1049 4781 1
40 % 1049 4781 1
30 % 1152 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures