Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 909
95 % 12 53 443
90 % 12 53 471
70 % 19 122 167
50 % 19 122 198
40 % 19 122 214
30 % 19 125 226
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11396
95 % 1 4 11056
90 % 1 4 10899
70 % 432 1945 1
50 % 887 4012 1
40 % 887 4014 1
30 % 967 4750 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11580
95 % 1 4 11199
90 % 1 4 11027
70 % 353 1648 3
50 % 888 4012 1
40 % 888 4014 1
30 % 968 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.