Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 29 1057
95 % 12 57 550 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 12 57 577
70 % 19 129 184
50 % 19 129 226
40 % 19 129 245
30 % 19 132 251
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13107
95 % 1 4 12600 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 4 12416
70 % 530 2376 2
50 % 1094 4913 1
40 % 1094 4913 1
30 % 1202 5780 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13314
95 % 1 4 12764 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 4 12553
70 % 530 2426 1
50 % 1095 4913 1
40 % 1095 4913 1
30 % 1203 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures