POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE9
Sequence Clusters for the Sequence Entities in PDB 3SE9
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 18 1672
95% 8 39 648
90% 8 39 679
70% 12 60 349
50% 12 60 385
40% 12 60 409
30% 12 60 414
Entity #2: Chains: H - Heavy chain of antibody VRC-PG04 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9791
95% 1 4 9602
90% 1 4 9487
70% 331 1564 2
50% 680 3242 1
40% 680 3243 1
30% 741 3827 1
Entity #3: Chains: L - Light chain of antibody VRC-PG04 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9954
95% 1 4 9730
90% 1 4 9597
70% 275 1361 3
50% 681 3242 1
40% 681 3243 1
30% 742 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.