Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 24 1014
95 % 11 48 474
90 % 11 48 500
70 % 17 77 273
50 % 17 77 310
40 % 17 77 336
30 % 18 111 242
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10622
95 % 1 4 10356
90 % 1 4 10217
70 % 385 1790 1
50 % 792 3692 1
40 % 792 3693 1
30 % 865 4355 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 10797
95 % 1 4 10492
90 % 1 4 10334
70 % 315 1526 3
50 % 793 3692 1
40 % 793 3693 1
30 % 866 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.