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Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE9
Sequence Clusters for the Sequence Entities in PDB 3SE9
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 19 1400
95% 8 40 612
90% 8 40 642
70% 14 64 332
50% 14 64 364
40% 14 64 389
30% 14 64 396
Entity #2: Chains: H - Heavy chain of antibody VRC-PG04 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9881
95% 1 4 9674
90% 1 4 9556
70% 334 1590 2
50% 687 3295 1
40% 687 3296 1
30% 750 3893 1
Entity #3: Chains: L - Light chain of antibody VRC-PG04 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 10042
95% 1 4 9800
90% 1 4 9664
70% 279 1388 3
50% 688 3295 1
40% 688 3296 1
30% 751 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.