Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 894
95 % 12 52 435
90 % 12 52 463
70 % 19 120 166
50 % 19 120 198
40 % 19 120 214
30 % 19 123 222
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11116
95 % 1 4 10812
90 % 1 4 10657
70 % 412 1896 1
50 % 846 3908 1
40 % 846 3909 1
30 % 924 4637 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11297
95 % 1 4 10952
90 % 1 4 10779
70 % 337 1611 3
50 % 847 3908 1
40 % 847 3909 1
30 % 925 4637 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.