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Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE9
Sequence Clusters for the Sequence Entities in PDB 3SE9
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 1986
95% 8 36 689
90% 8 36 721
70% 12 57 349
50% 12 57 385
40% 12 57 406
30% 12 57 415
Entity #2: Chains: H - Heavy chain of antibody VRC-PG04 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9445
95% 1 4 9342
90% 1 4 9233
70% 318 1511 2
50% 654 3136 1
40% 654 3137 1
30% 715 3713 1
Entity #3: Chains: L - Light chain of antibody VRC-PG04 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9597
95% 1 4 9468
90% 1 4 9345
70% 265 1317 3
50% 655 3136 1
40% 655 3137 1
30% 716 3713 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.