Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 910
95 % 12 53 445
90 % 12 53 473
70 % 19 122 167
50 % 19 122 198
40 % 19 122 215
30 % 19 125 226
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11426
95 % 1 4 11088
90 % 1 4 10929
70 % 433 1952 1
50 % 889 4026 1
40 % 889 4028 1
30 % 969 4764 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 11611
95 % 1 4 11231
90 % 1 4 11057
70 % 354 1653 3
50 % 890 4026 1
40 % 890 4028 1
30 % 970 4764 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.