Sequence Similarity Clusters for the Entities in PDB 3SE9

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 29 1000
95 % 12 55 556
90 % 12 55 590
70 % 19 126 178
50 % 19 126 221
40 % 19 126 240
30 % 19 129 248
Entity #2 | Chains: H
Heavy chain of antibody VRC-PG04 protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12601
95 % 1 4 12151
90 % 1 4 11982
70 % 489 2238 2
50 % 1009 4619 1
40 % 1009 4619 1
30 % 1107 5440 1
Entity #3 | Chains: L
Light chain of antibody VRC-PG04 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 12801
95 % 1 4 12308
90 % 1 4 12113
70 % 488 2280 1
50 % 1010 4619 1
40 % 1010 4619 1
30 % 1108 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.