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Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE9
Sequence Clusters for the Sequence Entities in PDB 3SE9
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 15 1868
95% 8 36 665
90% 8 36 696
70% 12 56 372
50% 12 56 407
40% 12 56 434
30% 12 56 450
Entity #2: Chains: H - Heavy chain of antibody VRC-PG04 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9227
95% 1 4 9146
90% 1 4 9045
70% 312 1481 2
50% 642 3072 1
40% 642 3073 1
30% 701 3633 1
Entity #3: Chains: L - Light chain of antibody VRC-PG04 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 9380
95% 1 4 9273
90% 1 4 9157
70% 259 1292 3
50% 643 3072 1
40% 643 3073 1
30% 702 3633 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.