Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 29 996
95 % 6 55 545
90 % 6 55 578
70 % 11 126 177
50 % 11 126 221
40 % 11 126 240
30 % 11 129 248
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20250
95 % 2 3 13990 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 3 13753
70 % 326 2222 2
50 % 668 4587 1
40 % 668 4587 1
30 % 722 5394 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15051
95 % 2 3 14142 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 5 7613
70 % 326 2264 1
50 % 669 4587 1
40 % 669 4587 1
30 % 723 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.