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Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE8
Sequence Clusters for the Sequence Entities in PDB 3SE8
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 19 1394
95% 4 40 609
90% 4 40 639
70% 9 63 332
50% 9 63 365
40% 9 63 389
30% 9 63 396
Entity #2: Chains: H - Heavy chain of antibody VRC03 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16101
95% 1 2 14207
90% 1 2 13947
70% 221 1569 2
50% 451 3252 1
40% 451 3253 1
30% 491 3839 1
Entity #3: Chains: L - Light chain of antibody VRC03 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16645
95% 1 2 14605
90% 1 4 7233
70% 184 1366 3
50% 452 3252 1
40% 452 3253 1
30% 492 3839 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.