Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 909
95 % 6 53 443
90 % 6 53 471
70 % 11 122 167
50 % 11 122 198
40 % 11 122 214
30 % 11 125 226
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18518
95 % 2 3 12845
90 % 2 3 12636
70 % 287 1945 1
50 % 586 4012 1
40 % 586 4014 1
30 % 632 4750 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13739
95 % 2 3 12977
90 % 2 5 6919
70 % 237 1648 3
50 % 587 4012 1
40 % 587 4014 1
30 % 633 4750 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.