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An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE8
Sequence Clusters for the Sequence Entities in PDB 3SE8
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2033
95% 4 36 716
90% 4 36 748
70% 8 57 355
50% 8 57 393
40% 8 57 415
30% 8 57 422
Entity #2: Chains: H - Heavy chain of antibody VRC03 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15907
95% 1 2 14068
90% 1 2 13804
70% 216 1537 2
50% 441 3188 1
40% 441 3189 1
30% 479 3771 1
Entity #3: Chains: L - Light chain of antibody VRC03 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16450
95% 1 2 14462
90% 1 2 14121
70% 181 1339 3
50% 442 3188 1
40% 442 3189 1
30% 480 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.