POP-OUT | CLOSE

An Information Portal to 107620 Biological Macromolecular Structures

Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE8
Sequence Clusters for the Sequence Entities in PDB 3SE8
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2048
95% 4 36 723
90% 4 36 756
70% 8 57 357
50% 8 57 395
40% 8 57 417
30% 8 57 424
Entity #2: Chains: H - Heavy chain of antibody VRC03 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15990
95% 1 2 14121
90% 1 2 13857
70% 217 1548 2
50% 443 3210 1
40% 443 3211 1
30% 481 3793 1
Entity #3: Chains: L - Light chain of antibody VRC03 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16534
95% 1 2 14517
90% 1 2 14175
70% 182 1349 3
50% 444 3210 1
40% 444 3211 1
30% 482 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.