Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 894
95 % 6 52 435
90 % 6 52 463
70 % 11 120 166
50 % 11 120 198
40 % 11 120 214
30 % 11 123 222
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18083
95 % 1 2 15899
90 % 1 2 15576
70 % 273 1896 1
50 % 558 3908 1
40 % 558 3909 1
30 % 604 4637 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18703
95 % 1 2 16343
90 % 1 4 8084
70 % 227 1611 3
50 % 559 3908 1
40 % 559 3909 1
30 % 605 4637 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.