Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 29 1072
95 % 6 57 556 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 6 57 582
70 % 11 130 184
50 % 11 130 225
40 % 11 130 242
30 % 11 133 251
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21548
95 % 2 3 14822
90 % 2 3 14579
70 % 373 2424 2
50 % 766 5011 1
40 % 766 5011 1
30 % 864 5941 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16021
95 % 2 3 14972 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 5 8056
70 % 374 2474 1
50 % 767 5011 1
40 % 767 5011 1
30 % 865 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures