Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 29 1040
95 % 6 57 543
90 % 6 57 571
70 % 11 129 182
50 % 11 129 223
40 % 11 129 241
30 % 11 132 248
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21060
95 % 2 3 14509
90 % 2 3 14280
70 % 350 2342 2
50 % 719 4843 1
40 % 719 4843 1
30 % 780 5705 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15647
95 % 2 3 14658
90 % 2 5 7890
70 % 351 2392 1
50 % 720 4843 1
40 % 720 4843 1
30 % 781 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures