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Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE8
Sequence Clusters for the Sequence Entities in PDB 3SE8
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 1881
95% 4 36 669
90% 4 36 700
70% 8 56 375
50% 8 56 411
40% 8 56 438
30% 8 56 454
Entity #2: Chains: H - Heavy chain of antibody VRC03 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15308
95% 1 2 13616
90% 1 2 13368
70% 206 1486 2
50% 421 3082 1
40% 421 3083 1
30% 457 3645 1
Entity #3: Chains: L - Light chain of antibody VRC03 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15831
95% 1 2 13998
90% 1 2 13674
70% 172 1293 3
50% 422 3082 1
40% 422 3083 1
30% 458 3645 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.