Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 29 1000
95 % 6 55 556
90 % 6 55 590
70 % 11 126 178
50 % 11 126 221
40 % 11 126 240
30 % 11 129 248
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20432
95 % 2 3 14096
90 % 2 3 13866
70 % 327 2238 2
50 % 670 4619 1
40 % 670 4619 1
30 % 726 5440 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15152
95 % 2 3 14246
90 % 2 5 7675
70 % 327 2280 1
50 % 671 4619 1
40 % 671 4619 1
30 % 727 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.