Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 898
95 % 6 53 434
90 % 6 53 461
70 % 11 121 166
50 % 11 121 198
40 % 11 121 214
30 % 11 124 223
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18177
95 % 1 2 15968
90 % 1 2 15646
70 % 276 1909 1
50 % 564 3934 1
40 % 564 3935 1
30 % 610 4663 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18799
95 % 1 2 16412
90 % 1 4 8129
70 % 228 1617 3
50 % 565 3934 1
40 % 565 3935 1
30 % 611 4663 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.