Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 29 1250
95 % 6 59 544 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 6 60 559
70 % 11 179 134
50 % 11 179 164
40 % 11 179 178
30 % 11 182 195
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23291
95 % 2 5 6598
90 % 2 7 4743
70 % 378 2478 2
50 % 774 5107 1
40 % 946 5756 1
30 % 1163 7175 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9777
95 % 2 4 9597 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 6 6168
70 % 378 2519 1
50 % 775 5107 1
40 % 947 5756 1
30 % 1164 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures