Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 29 980
95 % 6 55 540 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 6 55 573
70 % 11 126 179
50 % 11 126 220
40 % 11 126 240
30 % 11 129 246
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20075
95 % 2 3 13877 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 2 3 13645
70 % 323 2201 1
50 % 662 4545 1
40 % 662 4545 1
30 % 716 5350 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14928
95 % 2 3 14032 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 5 7546
70 % 268 1845 2
50 % 663 4545 1
40 % 663 4545 1
30 % 717 5350 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.