Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 885
95 % 6 52 432
90 % 6 52 458
70 % 11 120 165
50 % 11 120 196
40 % 11 120 212
30 % 11 123 222
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17934
95 % 1 2 15761
90 % 1 2 15446
70 % 272 1866 1
50 % 556 3846 1
40 % 556 3847 1
30 % 602 4574 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18549
95 % 1 2 16205
90 % 1 4 8021
70 % 226 1583 3
50 % 557 3846 1
40 % 557 3847 1
30 % 603 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.