Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 877
95 % 6 52 428
90 % 6 52 454
70 % 11 118 167
50 % 11 118 198
40 % 11 118 214
30 % 11 121 225
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17777
95 % 1 2 15631
90 % 1 2 15319
70 % 267 1846 1
50 % 546 3804 1
40 % 546 3805 1
30 % 592 4512 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18388
95 % 1 2 16073
90 % 1 4 7938
70 % 221 1565 3
50 % 547 3804 1
40 % 547 3805 1
30 % 593 4512 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.