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Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE8
Sequence Clusters for the Sequence Entities in PDB 3SE8
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 15 2063
95% 4 36 725
90% 4 36 759
70% 8 57 358
50% 8 57 398
40% 8 57 421
30% 8 57 427
Entity #2: Chains: H - Heavy chain of antibody VRC03 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16059
95% 1 2 14174
90% 1 2 13909
70% 220 1561 2
50% 449 3236 1
40% 449 3237 1
30% 487 3821 1
Entity #3: Chains: L - Light chain of antibody VRC03 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16604
95% 1 2 14571
90% 1 2 14228
70% 183 1358 3
50% 450 3236 1
40% 450 3237 1
30% 488 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.