Sequence Similarity Clusters for the Entities in PDB 3SE8

Entity #1 | Chains: G
HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 28 902
95 % 6 53 439
90 % 6 53 468
70 % 11 121 167
50 % 11 121 199
40 % 11 121 217
30 % 11 124 223
Entity #2 | Chains: H
Heavy chain of antibody VRC03 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 18353
95 % 2 3 12760
90 % 2 3 12555
70 % 283 1932 1
50 % 578 3985 1
40 % 578 3986 1
30 % 624 4715 1
Entity #3 | Chains: L
Light chain of antibody VRC03 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 13634
95 % 2 3 12893
90 % 2 5 6873
70 % 235 1639 3
50 % 579 3985 1
40 % 579 3986 1
30 % 625 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.