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Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Sequence Clustering and Redundancy Reduction Results
3SE8
Sequence Clusters for the Sequence Entities in PDB 3SE8
Entity #1: Chains: G - HIV-1 Clade AE strain 93TH057 gp120 protein, length: 353 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 24 965
95% 6 47 493
90% 6 47 518
70% 11 75 265
50% 11 75 303
40% 11 75 333
30% 11 75 343
Entity #2: Chains: H - Heavy chain of antibody VRC03 protein, length: 233 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16508
95% 1 2 14561
90% 1 2 14286
70% 236 1656 1
50% 483 3425 1
40% 483 3426 1
30% 525 4043 1
Entity #3: Chains: L - Light chain of antibody VRC03 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17072
95% 1 2 14974
90% 1 4 7402
70% 198 1434 3
50% 484 3425 1
40% 484 3426 1
30% 526 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.