Sequence Similarity Clusters for the Entities in PDB 3RUL

Entity #1 | Chains: A,B,C,D
Ubiquitin protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 307 6
95 % 223 374 5 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.1
PDBFlex
90 % 241 400 6
70 % 254 420 8
50 % 261 441 12
40 % 274 465 17
30 % 533 1012 10
Entity #2 | Chains: E,F,G,H
Dalbavancin protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.