Sequence Similarity Clusters for the Entities in PDB 3RUL

Entity #1 | Chains: A,B,C,D
Ubiquitin protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 314 4
95 % 229 383 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.0
PDBFlex
90 % 247 410 6
70 % 260 430 8
50 % 267 451 12
40 % 280 475 17
30 % 543 1026 9
Entity #2 | Chains: E,F,G,H
Dalbavancin protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.