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An Information Portal to 107049 Biological Macromolecular Structures

Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
Sequence Clustering and Redundancy Reduction Results
3RU8
Sequence Clusters for the Sequence Entities in PDB 3RU8
Entity #1: Chains: X - Epitope Scaffold 2bodx43 protein, length: 282 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44604
95% 1 1 31935
90% 2 2 16992
70% 7 7 6614
50% 7 7 6077
40% 11 11 3862
30% 11 11 3533
Entity #2: Chains: H - Antibody b12, Heavy Chain protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21155
95% 2 3 14097
90% 2 3 13831
70% 304 1537 2
50% 621 3188 1
40% 621 3189 1
30% 677 3771 1
Entity #3: Chains: L - Antibody b12, Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9762
95% 2 4 9581
90% 2 4 9457
70% 254 1339 3
50% 622 3188 1
40% 622 3189 1
30% 678 3771 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.