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Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
Sequence Clustering and Redundancy Reduction Results
3RU8
Sequence Clusters for the Sequence Entities in PDB 3RU8
Entity #1: Chains: X - Epitope Scaffold 2bodx43 protein, length: 282 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43883
95% 1 1 31471
90% 2 2 16730
70% 7 7 6502
50% 7 7 5990
40% 11 11 3803
30% 11 11 3486
Entity #2: Chains: H - Antibody b12, Heavy Chain protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20778
95% 2 3 13867
90% 2 3 13609
70% 298 1514 2
50% 609 3142 1
40% 609 3143 1
30% 665 3719 1
Entity #3: Chains: L - Antibody b12, Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9549
95% 2 4 9432
90% 2 4 9313
70% 249 1320 3
50% 610 3142 1
40% 610 3143 1
30% 666 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.