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Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
Sequence Clustering and Redundancy Reduction Results
3RU8
Sequence Clusters for the Sequence Entities in PDB 3RU8
Entity #1: Chains: X - Epitope Scaffold 2bodx43 protein, length: 282 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45230
95% 1 1 32411
90% 2 2 17159
70% 7 7 6685
50% 7 7 6140
40% 11 11 3908
30% 11 11 3571
Entity #2: Chains: H - Antibody b12, Heavy Chain protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21383
95% 2 3 14218
90% 2 3 13952
70% 310 1564 2
50% 633 3242 1
40% 633 3243 1
30% 689 3827 1
Entity #3: Chains: L - Antibody b12, Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9886
95% 2 4 9678
90% 2 4 9551
70% 258 1361 3
50% 634 3242 1
40% 634 3243 1
30% 690 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.