Sequence Similarity Clusters for the Entities in PDB 3RU8

Entity #1 | Chains: X
Epitope Scaffold 2bodx43 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58778
95 % 1 1 41885
90 % 2 2 22533
70 % 7 7 8837
50 % 7 7 8024
40 % 11 11 5072
30 % 11 11 4615
Entity #2 | Chains: H
Antibody b12, Heavy Chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 28455
95 % 2 4 10865
90 % 2 4 10730
70 % 514 2429 2
50 % 1057 5021 1
40 % 1057 5021 1
30 % 1191 5951 1
Entity #3 | Chains: L
Antibody b12, Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7545
95 % 2 5 8114
90 % 2 5 8050
70 % 514 2479 1
50 % 1058 5021 1
40 % 1058 5021 1
30 % 1192 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures