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Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
Sequence Clustering and Redundancy Reduction Results
3RU8
Sequence Clusters for the Sequence Entities in PDB 3RU8
Entity #1: Chains: X - Epitope Scaffold 2bodx43 protein, length: 282 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45486
95% 1 1 32580
90% 2 2 17261
70% 7 7 6733
50% 7 7 6178
40% 11 11 3924
30% 11 11 3587
Entity #2: Chains: H - Antibody b12, Heavy Chain protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21518
95% 2 3 14304
90% 2 3 14038
70% 313 1588 2
50% 640 3291 1
40% 640 3292 1
30% 698 3880 1
Entity #3: Chains: L - Antibody b12, Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 9967
95% 2 4 9741
90% 2 4 9613
70% 262 1386 3
50% 641 3291 1
40% 641 3292 1
30% 699 3880 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.