Sequence Similarity Clusters for the Entities in PDB 3RU8

Entity #1 | Chains: X
Epitope Scaffold 2bodx43 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57617
95 % 1 1 41095
90 % 2 2 22085
70 % 7 7 8645
50 % 7 7 7856
40 % 11 11 4975
30 % 11 11 4520
Entity #2 | Chains: H
Antibody b12, Heavy Chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27837
95 % 2 4 10599
90 % 2 4 10464
70 % 483 2342 2
50 % 994 4843 1
40 % 994 4843 1
30 % 1091 5705 1
Entity #3 | Chains: L
Antibody b12, Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7365
95 % 2 5 7933
90 % 2 5 7875
70 % 483 2392 1
50 % 995 4843 1
40 % 995 4843 1
30 % 1092 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures