Sequence Similarity Clusters for the Entities in PDB 3RU8

Entity #1 | Chains: X
Epitope Scaffold 2bodx43 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55646
95 % 1 1 39688
90 % 2 2 21243
70 % 7 7 8340
50 % 7 7 7577
40 % 11 11 4790
30 % 11 11 4362
Entity #2 | Chains: H
Antibody b12, Heavy Chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26749
95 % 2 4 10214 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 4 10094
70 % 452 2222 2
50 % 929 4587 1
40 % 929 4587 1
30 % 1016 5392 1
Entity #3 | Chains: L
Antibody b12, Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7079
95 % 2 5 7627
90 % 2 5 7583
70 % 451 2264 1
50 % 930 4587 1
40 % 930 4587 1
30 % 1017 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.