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Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
Sequence Clustering and Redundancy Reduction Results
3RU8
Sequence Clusters for the Sequence Entities in PDB 3RU8
Entity #1: Chains: X - Epitope Scaffold 2bodx43 protein, length: 282 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45945
95% 1 1 32886
90% 2 2 17436
70% 7 7 6793
50% 7 7 6228
40% 11 11 3967
30% 11 11 3627
Entity #2: Chains: H - Antibody b12, Heavy Chain protein, length: 230 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21749
95% 2 3 14434
90% 2 3 14171
70% 321 1622 2
50% 658 3355 1
40% 658 3356 1
30% 718 3971 1
Entity #3: Chains: L - Antibody b12, Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 10082
95% 2 4 9838
90% 2 4 9710
70% 268 1412 3
50% 659 3355 1
40% 659 3356 1
30% 719 3971 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.