Sequence Similarity Clusters for the Entities in PDB 3RMN

Entity #1 | Chains: L
Thrombin Light Chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 78 335 45
95 % 78 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 78 336 66
70 % 78 338 78
50 % 78 338 107
40 % 78 338 131
30 % 78 338 136
Entity #2 | Chains: H
Thrombin Heavy Chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 290 57
95 % 82 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 82 381 39
70 % 82 405 46
50 % 82 405 84
40 % 552 1698 4
30 % 577 1848 6
Entity #3 | Chains: I
Hirudin variant-2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures