Sequence Similarity Clusters for the Entities in PDB 3RML

Entity #1 | Chains: L
Thrombin Light Chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 335 45
95 % 42 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 42 336 66
70 % 42 338 77
50 % 42 338 102
40 % 42 338 126
30 % 42 338 137
Entity #2 | Chains: H
Thrombin Heavy Chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 290 55
95 % 42 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 42 381 39
70 % 42 405 45
50 % 42 405 81
40 % 269 1695 4
30 % 277 1845 6
Entity #3 | Chains: I
Hirudin variant-2 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.