Sequence Similarity Clusters for the Entities in PDB 3RAF

Entity #1 | Chains: A,B
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 14 1163
95 % 6 14 1591
90 % 6 14 1628
70 % 6 14 1652
50 % 16 31 579
40 % 16 31 627
30 % 16 31 623
Entity #2 | Chains: C,D
DNA topoisomerase 4 subunit B protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 1521
95 % 5 12 2035
90 % 5 12 2082
70 % 5 12 2097
50 % 5 12 2111
40 % 7 15 1794
30 % 7 15 1701
Entity #3 | Chains: E
5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: G
5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: H
5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.