Sequence Similarity Clusters for the Entities in PDB 3RAF

Entity #1 | Chains: A,B
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 14 1744
95 % 6 14 2053 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.3
PDBFlex
90 % 6 14 2105
70 % 6 14 2112
50 % 30 49 477
40 % 31 50 527
30 % 31 50 532
Entity #2 | Chains: C,D
DNA topoisomerase 4 subunit B protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 2194
95 % 5 12 2498 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 5 12 2568
70 % 5 12 2557
50 % 25 39 669
40 % 25 39 696
30 % 25 41 650
Entity #3 | Chains: E
5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: G
5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: H
5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures