Sequence Similarity Clusters for the Entities in PDB 3RAE

Entity #1 | Chains: A,B
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 14 1814
95 % 2 14 2134 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 2 14 2186
70 % 2 14 2199
50 % 22 49 486
40 % 23 50 539
30 % 23 50 544
Entity #2 | Chains: C,D
DNA topoisomerase 4 subunit B protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 2290
95 % 2 12 2588 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 2 12 2656
70 % 2 12 2642
50 % 19 39 693
40 % 19 39 728
30 % 19 41 679
Entity #3 | Chains: E
5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: G
5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: H
5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3K9F 2 C, D DNA topoisomerase 4 subunit B residues 404-647 1313 5.99.1.3 | Details
2 3RAE 2 C, D DNA topoisomerase 4 subunit B UNP residues 404-647 1313 5.99.1.3 | Details
3 4KOE 2 C, D DNA topoisomerase 4 subunit B ParE30, UNP residues 404-647 1313 5.99.1.3 | Details
4 4KPF 2 C, D ParE30 ParE30 1313 5.99.1.3 | Details
5 3RAF 2 C, D DNA topoisomerase 4 subunit B UNP residues 404-647 1313 5.99.1.3 | Details
6 4KPE 2 C, D DNA topoisomerase 4 subunit B ParE30, UNP residues 404-647 1313 5.99.1.3 | Details
7 3LTN 2 C, D DNA topoisomerase 4 subunit B residues 404-647 1313 5.99.1.3 | Details
8 3KSA 2 C, D DNA topoisomerase 4 subunit B residues 404-647 1313 5.99.1.3 | Details
9 3RAD 2 C, D DNA topoisomerase 4 subunit B UNP residues 404-647 1313 5.99.1.3 | Details
10 3KSB 2 C, D DNA topoisomerase 4 subunit B residues 404-647 1313 5.99.1.3 | Details
11 3FOF 2 C, D DNA topoisomerase 4 subunit B residues 404-647 1313 5.99.1.3 | Details
12 3FOE 2 C, D DNA topoisomerase 4 subunit B residues 404-647 1313 5.99.1.3 | Details