Sequence Similarity Clusters for the Entities in PDB 3RAE

Entity #1 | Chains: A,B
DNA topoisomerase 4 subunit A protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 14 1761
95 % 2 14 2071 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.4
PDBFlex
90 % 2 14 2119
70 % 2 14 2127
50 % 22 49 478
40 % 23 50 530
30 % 23 50 531
Entity #2 | Chains: C,D
DNA topoisomerase 4 subunit B protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 2213
95 % 2 12 2511 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 2 12 2584
70 % 2 12 2567
50 % 19 39 669
40 % 19 39 699
30 % 19 41 650
Entity #3 | Chains: E
5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F
5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: G
5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: H
5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures