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Quinolone(Clinafloxacin)-DNA cleavage complex of type IV topoisomerase from S. pneumoniae
Sequence Clustering and Redundancy Reduction Results
3RAD
Sequence Clusters for the Sequence Entities in PDB 3RAD
Entity #1: Chains: A,B - DNA topoisomerase 4 subunit A protein, length: 496 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 14 1056
95% 10 14 1452
90% 10 14 1486
70% 10 14 1509
50% 19 25 758
40% 19 25 783
30% 19 25 779
Entity #2: Chains: C,D - DNA topoisomerase 4 subunit B protein, length: 268 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 12 1394
95% 9 12 1872
90% 9 12 1909
70% 9 12 1919
50% 9 12 1949
40% 11 15 1657
30% 11 15 1586
Entity #3: Chains: E - 5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: G - 5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: H - 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.