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Quinolone(Clinafloxacin)-DNA cleavage complex of type IV topoisomerase from S. pneumoniae
Sequence Clustering and Redundancy Reduction Results
3RAD
Sequence Clusters for the Sequence Entities in PDB 3RAD
Entity #1: Chains: A,B - DNA topoisomerase 4 subunit A protein, length: 496 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 11 1356
95% 7 11 1824
90% 7 11 1856
70% 7 11 1884
50% 16 22 787
40% 16 22 807
30% 16 22 811
Entity #2: Chains: C,D - DNA topoisomerase 4 subunit B protein, length: 268 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 9 1919
95% 6 9 2468
90% 6 9 2509
70% 6 9 2531
50% 6 9 2568
40% 8 12 2075
30% 8 12 1967
Entity #3: Chains: E - 5'-D(*CP*AP*TP*GP*AP*AP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: G - 5'-D(*CP*GP*TP*GP*CP*AP*T)-3' dna, length: 7 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: H - 5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.