Sequence Similarity Clusters for the Entities in PDB 3QX3

Entity #1 | Chains: A,B
DNA topoisomerase 2-beta protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 3537
95 % 1 10 3838 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 1 10 3904
70 % 1 12 3171
50 % 1 12 3105
40 % 1 17 2450
30 % 1 17 2299
Entity #2 | Chains: C,E
DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QX3 1 A, B DNA topoisomerase 2-beta hTOP2beta cleavage core, UNP residues 450-1206 9606 5.99.1.3 | Details
2 4J3N 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
3 5ZRF 1 A, B DNA topoisomerase 2-beta 9606 5.99.1.3 | Details
4 4G0V 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
5 4G0U 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
6 5GWJ 1 A, B DNA topoisomerase 2-beta UNP residues 450-1206 9606 5.99.1.3 | Details
7 4G0W 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
8 1BJT 1 A TOPOISOMERASE II DNA-BINDING AND CLEAVAGE CORE, RESIDUES 409-1201 4932 5.99.1.3 | Details
9 3L4J 1 A DNA topoisomerase 2 RESIDUES 421-1177 4932 5.99.1.3 | Details
10 1BGW 1 A TOPOISOMERASE RESIDUES 410 - 1202 4932 5.99.1.3 | Details
11 5GWI 1 A, B DNA topoisomerase 2-beta UNP residues 450-1206 9606 5.99.1.3 | Details
12 5ZEN 1 A DNA topoisomerase 2-beta 9606 5.99.1.3 | Details
13 4FM9 1 A DNA topoisomerase 2-alpha residues 431-1193 9606 5.99.1.3 | Details
14 5GWK 1 A, B DNA topoisomerase 2-alpha UNP residues 430-1188 9606 5.99.1.3 | Details
15 2RGR 3 A DNA topoisomerase 2 DNA binding and cleavage domain (residues 419-1177) 4932 5.99.1.3 | Details
16 3L4K 1 A DNA topoisomerase 2 RESIDUES 421-1177 4932 5.99.1.3 | Details
17 5ZQF 1 A DNA topoisomerase 2-beta 9606 5.99.1.3 | Details