Sequence Similarity Clusters for the Entities in PDB 3QX3

Entity #1 | Chains: A,B
DNA topoisomerase 2-beta protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 4738
95 % 1 7 5055 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 1 7 5086
70 % 1 9 3894
50 % 1 9 3792
40 % 1 14 2831
30 % 1 14 2609
Entity #2 | Chains: C,E
DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QX3 1 A, B DNA topoisomerase 2-beta hTOP2beta cleavage core, UNP residues 450-1206 9606 5.99.1.3 | Details
2 4J3N 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
3 4G0V 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
4 4G0U 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
5 5GWJ 1 A, B DNA topoisomerase 2-beta UNP residues 450-1206 9606 5.99.1.3 | Details
6 4G0W 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
7 1BJT 1 A TOPOISOMERASE II DNA-BINDING AND CLEAVAGE CORE, RESIDUES 409-1201 4932 5.99.1.3 | Details
8 3L4J 1 A DNA topoisomerase 2 RESIDUES 421-1177 4932 5.99.1.3 | Details
9 1BGW 1 A TOPOISOMERASE RESIDUES 410 - 1202 4932 5.99.1.3 | Details
10 5GWI 1 A, B DNA topoisomerase 2-beta UNP residues 450-1206 9606 5.99.1.3 | Details
11 4FM9 1 A DNA topoisomerase 2-alpha residues 431-1193 9606 5.99.1.3 | Details
12 5GWK 1 A, B DNA topoisomerase 2-alpha UNP residues 430-1188 9606 5.99.1.3 | Details
13 2RGR 3 A DNA topoisomerase 2 DNA binding and cleavage domain (residues 419-1177) 4932 5.99.1.3 | Details
14 3L4K 1 A DNA topoisomerase 2 RESIDUES 421-1177 4932 5.99.1.3 | Details