Sequence Similarity Clusters for the Entities in PDB 3QWO

Entity #1 | Chains: B,L
motavizumab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5597
95 % 2 6 4652 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.4
PDBFlex
90 % 94 693 3
70 % 336 2264 1
50 % 688 4587 1
40 % 688 4587 1
30 % 746 5392 1
Entity #2 | Chains: A,H
motavizumab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10205
95 % 1 5 4975 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 2 6 4653
70 % 336 2222 2
50 % 689 4587 1
40 % 689 4587 1
30 % 747 5392 1
Entity #3 | Chains: C,P
motavizumab epitope scaffold protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47767
95 % 1 1 35687 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34114
70 % 5 37 1131
50 % 5 37 1170
40 % 5 37 1180
30 % 5 37 1155

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.