Sequence Similarity Clusters for the Entities in PDB 3QWO

Entity #1 | Chains: B,L
motavizumab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5876
95 % 2 6 4922 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.4
PDBFlex
90 % 114 763 2
70 % 373 2426 1
50 % 763 4913 1
40 % 763 4913 1
30 % 829 5780 1
Entity #2 | Chains: A,H
motavizumab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10695
95 % 1 5 5258 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 2 6 4921
70 % 372 2376 2
50 % 764 4913 1
40 % 764 4913 1
30 % 830 5780 1
Entity #3 | Chains: C,P
motavizumab epitope scaffold protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49804
95 % 1 1 37160 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35467
70 % 5 37 1177
50 % 5 37 1221
40 % 5 37 1229
30 % 5 37 1202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures