Sequence Similarity Clusters for the Entities in PDB 3QWO

Entity #1 | Chains: B,L
motavizumab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5769
95 % 2 6 4816 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.4
PDBFlex
90 % 101 724 3
70 % 352 2346 1
50 % 720 4752 1
40 % 720 4752 1
30 % 783 5606 1
Entity #2 | Chains: A,H
motavizumab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10487
95 % 1 5 5149 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 2 6 4819
70 % 351 2299 2
50 % 721 4752 1
40 % 721 4752 1
30 % 784 5606 1
Entity #3 | Chains: C,P
motavizumab epitope scaffold protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48976
95 % 1 1 36587 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34943
70 % 5 37 1159
50 % 5 37 1196
40 % 5 37 1208
30 % 5 37 1183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.