Sequence Similarity Clusters for the Entities in PDB 3QWO

Entity #1 | Chains: B,L
motavizumab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5669
95 % 2 6 4734 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.9
PDBFlex
90 % 94 701 3
70 % 339 2287 1
50 % 694 4633 1
40 % 694 4633 1
30 % 756 5460 1
Entity #2 | Chains: A,H
motavizumab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10341
95 % 1 5 5068 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 2 6 4735
70 % 339 2244 2
50 % 695 4633 1
40 % 695 4633 1
30 % 757 5460 1
Entity #3 | Chains: C,P
motavizumab epitope scaffold protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48368
95 % 1 1 36139 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 34528
70 % 5 37 1141
50 % 5 37 1181
40 % 5 37 1192
30 % 5 37 1164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.