Sequence Similarity Clusters for the Entities in PDB 3QWO

Entity #1 | Chains: B,L
motavizumab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5974
95 % 2 6 4999 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.4
PDBFlex
90 % 123 791 2
70 % 387 2479 1
50 % 792 5021 1
40 % 792 5021 1
30 % 894 5951 1
Entity #2 | Chains: A,H
motavizumab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10892
95 % 1 5 5337 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.4
PDBFlex
90 % 2 6 5003
70 % 386 2429 2
50 % 793 5021 1
40 % 793 5021 1
30 % 895 5951 1
Entity #3 | Chains: C,P
motavizumab epitope scaffold protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50437
95 % 1 1 37624 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35899
70 % 9 41 1099
50 % 9 41 1148
40 % 9 41 1162
30 % 9 41 1138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures