Sequence Similarity Clusters for the Entities in PDB 3QVG

Entity #1 | Chains: A,C
DNA ligase 3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24693
95 % 2 5 10088 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 5 9965
70 % 2 5 9470
50 % 2 5 8568
40 % 2 5 7850
30 % 2 5 6918
Entity #2 | Chains: B,D
DNA repair protein XRCC1 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47696
95 % 2 3 13487 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 4 10860
70 % 2 4 10306
50 % 2 4 9325
40 % 2 4 8528
30 % 2 4 7508

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures