Sequence Similarity Clusters for the Entities in PDB 3QVG

Entity #1 | Chains: A,C
DNA ligase 3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24165
95 % 2 5 9920 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 5 9800
70 % 2 5 9314
50 % 2 5 8425
40 % 2 5 7719
30 % 2 5 6806
Entity #2 | Chains: B,D
DNA repair protein XRCC1 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46783
95 % 2 3 13247 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 4 10664
70 % 2 4 10118
50 % 2 4 9157
40 % 2 4 8378
30 % 2 4 7381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.