Sequence Similarity Clusters for the Entities in PDB 3QVG

Entity #1 | Chains: A,C
DNA ligase 3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25068
95 % 2 5 10258 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 5 10132
70 % 2 5 9620
50 % 2 5 8701
40 % 2 5 7968
30 % 2 5 7020
Entity #2 | Chains: B,D
DNA repair protein XRCC1 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48320
95 % 2 3 13709 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 4 11055
70 % 2 4 10481
50 % 2 4 9478
40 % 2 4 8663
30 % 2 4 7622

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures