Sequence Similarity Clusters for the Entities in PDB 3QVG

Entity #1 | Chains: A,C
DNA ligase 3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35431
95 % 2 5 9915 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 5 9794
70 % 2 5 9324
50 % 2 5 8469
40 % 2 5 7717
30 % 2 5 6107
Entity #2 | Chains: B,D
DNA repair protein XRCC1 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44495
95 % 2 3 13339 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 2 4 11188
70 % 2 4 10569
50 % 2 4 9513
40 % 2 4 8619
30 % 2 4 7451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures