Sequence Similarity Clusters for the Entities in PDB 3QLV

Entity #1 | Chains: A,B,E,G,I
Glutamate receptor, ionotropic kainate 5 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5954
95 % 4 4 6580 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 4 4 6559
70 % 4 4 6384
50 % 4 4 5948
40 % 4 4 5548
30 % 4 4 4991
Entity #2 | Chains: C,D,F,H,J
Glutamate receptor, ionotropic kainate 2 protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6831
95 % 5 5 4885 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 5 5 4899
70 % 6 6 4185
50 % 6 6 4047
40 % 6 6 3873
30 % 6 6 3584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.