Sequence Similarity Clusters for the Entities in PDB 3QLV

Entity #1 | Chains: A,B,E,G,I
Glutamate receptor, ionotropic kainate 5 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6125
95 % 4 4 6768 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 4 4 6744
70 % 4 4 6583
50 % 4 4 6125
40 % 4 4 5718
30 % 4 4 5136
Entity #2 | Chains: C,D,F,H,J
Glutamate receptor, ionotropic kainate 2 protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7035
95 % 5 5 5064 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 5 5 5083
70 % 6 6 4309
50 % 6 6 4152
40 % 6 6 3976
30 % 6 6 3685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures