Sequence Similarity Clusters for the Entities in PDB 3QLV

Entity #1 | Chains: A,B,E,G,I
Glutamate receptor, ionotropic kainate 5 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7015
95 % 4 4 7153 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 4 4 7121
70 % 4 4 6920
50 % 4 4 6423
40 % 4 4 5962
30 % 23 26 909
Entity #2 | Chains: C,D,F,H,J
Glutamate receptor, ionotropic kainate 2 protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4985
95 % 5 5 5297 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 5 5 5326
70 % 6 6 4492
50 % 6 6 4312
40 % 6 6 4074
30 % 24 26 909

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures