Sequence Similarity Clusters for the Entities in PDB 3QLP

Entity #1 | Chains: H
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 198 290 55
95 % 246 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 248 381 39
70 % 249 405 45
50 % 249 405 81
40 % 1191 1695 4
30 % 1280 1845 6
Entity #2 | Chains: L
Thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 221 335 45
95 % 221 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 221 336 66
70 % 221 338 77
50 % 221 338 102
40 % 221 338 126
30 % 221 338 137
Entity #3 | Chains: D
modified thrombin binding DNA aptamer dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.