Sequence Similarity Clusters for the Entities in PDB 3QLP

Entity #1 | Chains: H
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 195 288 55
95 % 243 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 245 379 38
70 % 246 403 45
50 % 246 403 77
40 % 1172 1669 4
30 % 1261 1811 6
Entity #2 | Chains: L
Thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 218 333 44
95 % 218 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 218 334 64
70 % 218 336 77
50 % 218 336 100
40 % 218 336 123
30 % 218 336 134
Entity #3 | Chains: D
modified thrombin binding DNA aptamer dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.