Sequence Similarity Clusters for the Entities in PDB 3Q6R

Entity #1 | Chains: A,B
Capsid protein protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 30 623
95 % 6 30 840 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 6 30 871
70 % 6 41 672
50 % 13 82 242
40 % 15 105 202
30 % 15 111 208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983
2 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983
3 5HZA 1 A, B Capsid protein 11983
4 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
5 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
6 3Q6R 1 A, B Capsid protein unp residues 225-538 11983
7 3Q3A 1 A, B Capsid protein unp residues 224-538 11983
8 5LKK 1 A, B Major capsid protein 11983
9 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983
10 4RPD 1 A, B Capsid protein P DOMAIN RESIDUES 225-525 11983
11 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
12 5LKG 1 A, B Capsid protein VP1 Protruding domain, UNP residues 225-530 11983
13 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
14 5HZB 1 A, B Capsid protein 11983
15 5F4O 1 A, B Capsid protein VP1 P DOMAIN (UNP residues 225-530) 11983
16 5BSY 1 A, B Capsid protein protruding domain, residues 224-538 11983
17 5O02 1 A Capsid protein UNP residues 225-528 11983
18 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983
19 5OMM 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
20 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
21 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
22 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
23 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983
24 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
25 3R6K 1 A VP1 protein unp residues 225-525 11983
26 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
27 5LKC 1 A, B Major capsid protein P DOMAIN (UNP residues 225-530) 11983
28 4Z4Z 1 A, B Capsid protein residues 224-538 11983
29 5BSX 1 A, B Capsid protein protruding domain, residues 224-538 11983
30 3R6J 1 A VP1 protein unp residues 225-525 11983
31 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983
32 4Z4U 1 A, B Capsid protein UNP residues 224-538 11983
33 4ROX 1 A, B Capsid protein VP1 P domain residues 225-525 11983
34 5F4J 1 A Protruding domain of GII.17 norovirus capsid P DOMAIN (UNP residues 225-530) 11983
35 5O05 2 A, B Capsid protein 11983
36 4X7E 1 A, B Capsid protein UNP residues 224-538 11983
37 5O03 1 A, B Capsid protein 11983
38 5F4M 1 A, B Capsid protein P DOMAIN (UNP residues 225-530) 11983
39 5O04 1 A, B Capsid protein 11983
40 5OMN 1 B Capsid protein 11983
41 3V7A 3 A, B Capsid P domain residues 224-538 11983