Sequence Similarity Clusters for the Entities in PDB 3Q6R

Entity #1 | Chains: A,B
Capsid protein protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 30 637
95 % 6 30 867 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 6 30 901
70 % 6 41 681
50 % 13 82 251
40 % 15 105 208
30 % 15 111 211

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4OOX 1 A VP1 unp residues 225-530 11983
2 4RLZ 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 11983
3 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
4 5IYP 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
5 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983
6 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983
7 5IYQ 1 A, B Protruding domain of GII.4 norovirus CHDC2094 capsid P DOMAIN (UNP residues 225-530) 11983
8 5HZA 1 A, B Capsid protein 11983
9 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
10 5IYW 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
11 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
12 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 11983
13 3Q6R 1 A, B Capsid protein unp residues 225-538 11983
14 3Q3A 1 A, B Capsid protein unp residues 224-538 11983
15 5LKK 1 A, B Major capsid protein 11983
16 5KON 1 A, B VP1 Protruding domain, UNP residues 225-530 11983
17 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
18 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983
19 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
20 4RPD 1 A, B Capsid protein P DOMAIN RESIDUES 225-525 11983
21 5J35 1 A, B VP1 11983
22 5IYR 1 A, B GII.4 norovirus CHDC2094 capsid Protruding Domain (UNP residues 225-530) 11983
23 4OOV 1 A, B Major capsid protein unp residues 225-530 11983
24 5J3O 1 A, B VP1 11983
25 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
26 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
27 5LKG 1 A, B Capsid protein VP1 Protruding domain, UNP residues 225-530 11983
28 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
29 5IYN 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
30 5HZB 1 A, B Capsid protein 11983
31 5F4O 1 A, B Capsid protein VP1 P DOMAIN (UNP residues 225-530) 11983
32 4OOS 1 A VP1 11983
33 5BSY 1 A, B Capsid protein protruding domain, residues 224-538 11983
34 4RPB 1 A, B, C Capsid protein VP1 P Domain residues 225-532 11983
35 5O02 1 A Capsid protein UNP residues 225-528 11983
36 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983
37 5OMM 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
38 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
39 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
40 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
41 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
42 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
43 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983
44 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
45 3R6K 1 A VP1 protein unp residues 225-525 11983
46 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
47 5LKC 1 A, B Major capsid protein P DOMAIN (UNP residues 225-530) 11983
48 4OPV 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 11983
49 4Z4Z 1 A, B Capsid protein residues 224-538 11983
50 5BSX 1 A, B Capsid protein protruding domain, residues 224-538 11983
51 3R6J 1 A VP1 protein unp residues 225-525 11983
52 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 11983
53 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983
54 4Z4U 1 A, B Capsid protein UNP residues 224-538 11983
55 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
56 4ROX 1 A, B Capsid protein VP1 P domain residues 225-525 11983
57 5F4J 1 A Protruding domain of GII.17 norovirus capsid P DOMAIN (UNP residues 225-530) 11983
58 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 11983
59 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
60 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 11983
61 4X7C 1 A, B VP1 UNP residues 225-530 11983
62 4RM0 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 11983
63 5O05 2 A, B Capsid protein 11983
64 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
65 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 11983
66 4X7E 1 A, B Capsid protein UNP residues 224-538 11983
67 2OBT 1 A Capsid protein P Domain 142786
68 5O03 1 A, B Capsid protein 11983
69 2OBS 1 A Capsid protein P Domain 142786
70 5F4M 1 A, B Capsid protein P DOMAIN (UNP residues 225-530) 11983
71 4X7D 1 A, B VP1 UNP residues 225-530 11983
72 2OBR 1 A Capsid protein P Domain 142786
73 5O04 1 A, B Capsid protein 11983
74 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
75 5LFE 1 A, B VP1 11983
76 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
77 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
78 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
79 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 11983
80 5OMN 1 B Capsid protein 11983
81 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
82 3V7A 3 A, B Capsid P domain residues 224-538 11983