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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lex
Sequence Clustering and Redundancy Reduction Results
3Q6R
Cluster # 314 Members. Sequence cutoff: 50% Cluster size: 43 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4OOX 1 A VP1 unp residues 225-530 546987  
2 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
3 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
4 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
5 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
6 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
7 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 546987  
8 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
9 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
10 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
11 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
12 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
13 4OOV 1 A, B Major capsid protein unp residues 225-530 1182143  
14 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
15 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
16 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
17 4OOS 1 A VP1 1241973  
18 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
19 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
20 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
21 3R6K 1 A VP1 protein unp residues 225-525 95340  
22 3R6J 1 A VP1 protein unp residues 225-525 95340  
23 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
24 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
25 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
26 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 1182143  
27 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
28 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 1241973  
29 4X7C 1 A, B VP1 UNP residues 225-530 546980  
30 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
31 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
32 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
33 2OBT 1 A Capsid protein P Domain 142786  
34 2OBS 1 A Capsid protein P Domain 142786  
35 4X7D 1 A, B VP1 UNP residues 225-530 1241973  
36 2OBR 1 A Capsid protein P Domain 142786  
37 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
38 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
39 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
40 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
41 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
42 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
43 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q6R
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 13 1192
95% 5 13 1619
90% 5 13 1662
70% 5 15 1545
50% 8 43 314
40% 8 43 345
30% 10 69 231
 

Documentation

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