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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lex
Sequence Clustering and Redundancy Reduction Results
3Q6R
Cluster # 264 Members. Sequence cutoff: 50% Cluster size: 54 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4OOX 1 A VP1 unp residues 225-530 546987  
2 4RLZ 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 286545  
3 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
4 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
5 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
6 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
7 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
8 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 546987  
9 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
10 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
11 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
12 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
13 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
14 4OOV 1 A, B Major capsid protein unp residues 225-530 1182143  
15 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
16 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
17 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
18 4OOS 1 A VP1 1241973  
19 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
20 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
21 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
22 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
23 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
24 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
25 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983  
26 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
27 3R6K 1 A VP1 protein unp residues 225-525 95340  
28 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
29 4OPV 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
30 4Z4Z 1 A, B Capsid protein residues 224-538 11983  
31 3R6J 1 A VP1 protein unp residues 225-525 95340  
32 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
33 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
34 4Z4U 1 A, B Capsid protein UNP residues 224-538 747305  
35 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
36 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 1182143  
37 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
38 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 1241973  
39 4X7C 1 A, B VP1 UNP residues 225-530 546980  
40 4RM0 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 286545  
41 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
42 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
43 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
44 2OBT 1 A Capsid protein P Domain 142786  
45 2OBS 1 A Capsid protein P Domain 142786  
46 4X7D 1 A, B VP1 UNP residues 225-530 1241973  
47 2OBR 1 A Capsid protein P Domain 142786  
48 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
49 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
50 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
51 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
52 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
53 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
54 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q6R
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 21 692
95% 5 21 962
90% 5 21 988
70% 5 23 970
50% 9 54 264
40% 9 54 288
30% 11 80 213
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.