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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lex
Sequence Clustering and Redundancy Reduction Results
3Q6R
Cluster # 221 Members. Sequence cutoff: 30% Cluster size: 69 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4OOX 1 A VP1 unp residues 225-530 546987  
2 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
3 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
4 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
5 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
6 2ZL7 1 A, B 58 kd capsid protein P-domain 11983  
7 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
8 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 546987  
9 4RDL 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
10 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
11 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
12 4P25 1 A, B, C, D Major capsid protein 1097017  
13 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
14 4RDJ 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
15 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
16 2ZL6 1 A, B 58 kd capsid protein P-domain 11983  
17 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
18 3AST 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
19 4OOV 1 A, B Major capsid protein unp residues 225-530 1182143  
20 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
21 2ZL5 1 A, B 58 kd capsid protein P-domain 11983  
22 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
23 4P1V 1 A, B, C, D P domain of VPI 1097017  
24 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
25 4RDK 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
26 4OOS 1 A VP1 1241973  
27 4P12 1 A, B, C, D Major capsid protein 1097017  
28 3ASQ 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
29 3ASP 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
30 3ASS 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
31 4P3I 1 A, B, C, D P domain of VP1 1097017  
32 4QV2 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
33 4P2N 1 A, B, C, D Major capsid protein UNP residues 226-526 1097017  
34 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
35 3ASR 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
36 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
37 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
38 3R6K 1 A VP1 protein unp residues 225-525 95340  
39 3R6J 1 A VP1 protein unp residues 225-525 95340  
40 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
41 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
42 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
43 4P26 1 A, B, C, D P domain of VP1 1097017  
44 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 1182143  
45 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
46 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 1241973  
47 4X7C 1 A, B VP1 UNP residues 225-530 546980  
48 3LQ6 1 A, B Capsid protein Protruding (P) Domain, residues 228-540 223997  
49 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
50 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
51 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
52 2OBT 1 A Capsid protein P Domain 142786  
53 3LQE 1 A Capsid protein Protruding (P) Domain, residues 228-540 223997  
54 2OBS 1 A Capsid protein P Domain 142786  
55 4X7D 1 A, B VP1 UNP residues 225-530 1241973  
56 4QVA 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
57 4QVJ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
58 2OBR 1 A Capsid protein P Domain 142786  
59 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
60 3D26 1 A, B 58 kd capsid protein UNP residues 230-530 11983  
61 4QUZ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
62 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
63 3BY2 1 A 58 kd capsid protein UNP residues 218-522 11983  
64 3BY1 1 A 58 kd capsid protein UNP residues 218-530 11983  
65 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
66 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
67 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
68 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
69 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q6R
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 13 1154
95% 5 13 1578
90% 5 13 1619
70% 5 15 1503
50% 8 43 301
40% 8 43 328
30% 10 69 221
 

Documentation

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