POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lex
Sequence Clustering and Redundancy Reduction Results
3Q6R
Cluster # 241 Members. Sequence cutoff: 30% Cluster size: 62 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 4OOX 1 A VP1 unp residues 225-530 546987  
2 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
3 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
4 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
5 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
6 2ZL7 1 A, B 58 kd capsid protein P-domain 11983  
7 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
8 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 546987  
9 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
10 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
11 4P25 1 A, B, C, D Major capsid protein 1097017  
12 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
13 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
14 2ZL6 1 A, B 58 kd capsid protein P-domain 11983  
15 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
16 3AST 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
17 4OOV 1 A, B Major capsid protein unp residues 225-530 1182143  
18 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
19 2ZL5 1 A, B 58 kd capsid protein P-domain 11983  
20 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
21 4P1V 1 A, B, C, D P domain of VPI 1097017  
22 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
23 4OOS 1 A VP1 1241973  
24 4P12 1 A, B, C, D Major capsid protein 1097017  
25 3ASQ 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
26 3ASP 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
27 3ASS 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
28 4P3I 1 A, B, C, D P domain of VP1 1097017  
29 4QV2 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
30 4P2N 1 A, B, C, D Major capsid protein UNP residues 226-526 1097017  
31 3ASR 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
32 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
33 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
34 3R6K 1 A VP1 protein unp residues 225-525 95340  
35 3R6J 1 A VP1 protein unp residues 225-525 95340  
36 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
37 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
38 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
39 4P26 1 A, B, C, D P domain of VP1 1097017  
40 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 1182143  
41 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
42 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 1241973  
43 3LQ6 1 A, B Capsid protein Protruding (P) Domain, residues 228-540 223997  
44 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
45 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
46 2OBT 1 A Capsid protein P Domain 142786  
47 3LQE 1 A Capsid protein Protruding (P) Domain, residues 228-540 223997  
48 2OBS 1 A Capsid protein P Domain 142786  
49 4QVA 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
50 4QVJ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
51 2OBR 1 A Capsid protein P Domain 142786  
52 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
53 3D26 1 A, B 58 kd capsid protein UNP residues 230-530 11983  
54 4QUZ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
55 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
56 3BY2 1 A 58 kd capsid protein UNP residues 218-522 11983  
57 3BY1 1 A 58 kd capsid protein UNP residues 218-530 11983  
58 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
59 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
60 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
61 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
62 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q6R
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 11 1463
95% 5 11 1952
90% 5 11 1982
70% 5 13 1751
50% 8 39 337
40% 8 39 363
30% 9 62 241
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.