Sequence Similarity Clusters for the Entities in PDB 3Q6Q

Entity #1 | Chains: A,B
Capsid protein protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 30 614
95 % 8 30 828 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.5
PDBFlex
90 % 8 30 862
70 % 9 41 664
50 % 18 82 239
40 % 22 105 202
30 % 22 111 208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4OOX 1 A VP1 unp residues 225-530 11983
2 4RLZ 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 11983
3 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
4 5IYP 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
5 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983
6 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983
7 5IYQ 1 A, B Protruding domain of GII.4 norovirus CHDC2094 capsid P DOMAIN (UNP residues 225-530) 11983
8 5HZA 1 A, B Capsid protein 11983
9 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
10 2ZL7 1 A, B 58 kd capsid protein P-domain 524364
11 5IYW 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
12 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
13 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 11983
14 4RDL 1 A, B Capsid Protrusion domain, UNP residues 227-526 11983
15 3Q6R 1 A, B Capsid protein unp residues 225-538 11983
16 3Q3A 1 A, B Capsid protein unp residues 224-538 11983
17 5LKK 1 A, B Major capsid protein 11983
18 5KON 1 A, B VP1 Protruding domain, UNP residues 225-530 11983
19 4P25 1 A, B, C, D Major capsid protein 11983
20 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
21 4RDJ 1 A, B Capsid Protrusion domain, UNP residues 227-526 11983
22 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983
23 2ZL6 1 A, B 58 kd capsid protein P-domain 524364
24 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
25 3AST 1 A, B Capsid protein UNP RESIDUES 221-541 11983
26 4RPD 1 A, B Capsid protein P DOMAIN RESIDUES 225-525 11983
27 5J35 1 A, B VP1 11983
28 5IYR 1 A, B GII.4 norovirus CHDC2094 capsid Protruding Domain (UNP residues 225-530) 11983
29 4OOV 1 A, B Major capsid protein unp residues 225-530 11983
30 5J3O 1 A, B VP1 11983
31 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
32 2ZL5 1 A, B 58 kd capsid protein P-domain 524364
33 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
34 5LKG 1 A, B Capsid protein VP1 Protruding domain, UNP residues 225-530 11983
35 4P1V 1 A, B, C, D P domain of VPI 11983
36 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
37 5IYN 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
38 4RDK 1 A, B Capsid Protrusion domain, UNP residues 227-526 11983
39 5HZB 1 A, B Capsid protein 11983
40 5F4O 1 A, B Capsid protein VP1 P DOMAIN (UNP residues 225-530) 11983
41 4OOS 1 A VP1 11983
42 4P12 1 A, B, C, D Major capsid protein 11983
43 5BSY 1 A, B Capsid protein protruding domain, residues 224-538 11983
44 4RPB 1 A, B, C Capsid protein VP1 P Domain residues 225-532 11983
45 3ASQ 1 A, B Capsid protein UNP RESIDUES 221-541 11983
46 3ASP 1 A, B Capsid protein UNP RESIDUES 221-541 11983
47 3ASS 1 A, B Capsid protein UNP RESIDUES 221-541 11983
48 4P3I 1 A, B, C, D P domain of VP1 11983
49 4P2N 1 A, B, C, D Major capsid protein UNP residues 226-526 11983
50 5O02 1 A Capsid protein UNP residues 225-528 11983
51 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983
52 3ASR 1 A, B Capsid protein UNP RESIDUES 221-541 11983
53 5OMM 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
54 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
55 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
56 5N7M 1 A, B Capsid protein VP1 Sequence maps to GenBank entry M87661.1, protein id AAB50466.1, residues 224 to 530 11983
57 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
58 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
59 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
60 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983
61 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
62 3R6K 1 A VP1 protein unp residues 225-525 11983
63 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
64 5LKC 1 A, B Major capsid protein P DOMAIN (UNP residues 225-530) 11983
65 4OPV 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 11983
66 4Z4Z 1 A, B Capsid protein residues 224-538 11983
67 5BSX 1 A, B Capsid protein protruding domain, residues 224-538 11983
68 3R6J 1 A VP1 protein unp residues 225-525 11983
69 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 11983
70 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983
71 4Z4U 1 A, B Capsid protein UNP residues 224-538 11983
72 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
73 4P26 1 A, B, C, D P domain of VP1 11983
74 4ROX 1 A, B Capsid protein VP1 P domain residues 225-525 11983
75 5F4J 1 A Protruding domain of GII.17 norovirus capsid P DOMAIN (UNP residues 225-530) 11983
76 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 11983
77 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
78 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 11983
79 4X7C 1 A, B VP1 UNP residues 225-530 11983
80 4RM0 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 11983
81 5O05 2 A, B Capsid protein 11983
82 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
83 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 11983
84 4X7E 1 A, B Capsid protein UNP residues 224-538 11983
85 2OBT 1 A Capsid protein P Domain 142786
86 5O03 1 A, B Capsid protein 11983
87 2OBS 1 A Capsid protein P Domain 142786
88 5F4M 1 A, B Capsid protein P DOMAIN (UNP residues 225-530) 11983
89 4X7D 1 A, B VP1 UNP residues 225-530 11983
90 5KW9 1 A Capsid protein VP1 11983
91 5E6T 1 A, B Capsid P DOMAIN, UNP residues 225-530 11983
92 2OBR 1 A Capsid protein P Domain 142786
93 5O04 1 A, B Capsid protein 11983
94 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
95 3D26 1 A, B 58 kd capsid protein UNP residues 230-530 524364
96 5LFE 1 A, B VP1 11983
97 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
98 3BY2 1 A 58 kd capsid protein UNP residues 218-522 11983
99 3BY1 1 A 58 kd capsid protein UNP residues 218-530 11983
100 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
101 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
102 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 11983
103 5OMN 1 B Capsid protein 11983
104 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
105 3V7A 3 A, B Capsid P domain residues 224-538 11983