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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (triglycan)
Sequence Clustering and Redundancy Reduction Results
3Q3A
Cluster # 1500 Members. Sequence cutoff: 70% Cluster size: 15 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
2 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
3 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
4 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
5 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
6 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
7 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
8 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
9 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
10 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
11 3R6K 1 A VP1 protein unp residues 225-525 95340  
12 3R6J 1 A VP1 protein unp residues 225-525 95340  
13 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
14 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
15 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q3A
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 13 1153
95% 6 13 1575
90% 6 13 1616
70% 6 15 1500
50% 9 43 300
40% 9 43 328
30% 11 69 218
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.