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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (triglycan)
Sequence Clustering and Redundancy Reduction Results
3Q3A
Cluster # 506 Members. Sequence cutoff: 40% Cluster size: 25 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
2 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
3 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
4 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
5 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
6 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
7 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
8 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
9 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
10 3R6K 1 A VP1 protein unp residues 225-525 95340  
11 3R6J 1 A VP1 protein unp residues 225-525 95340  
12 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
13 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
14 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
15 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
16 2OBT 1 A Capsid protein P Domain 142786  
17 2OBS 1 A Capsid protein P Domain 142786  
18 2OBR 1 A Capsid protein P Domain 142786  
19 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
20 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
21 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
22 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
23 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
24 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
25 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q3A
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 11 1439
95% 6 11 1919
90% 6 11 1948
70% 6 13 1724
50% 6 25 476
40% 6 25 506
30% 7 44 313
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.