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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (triglycan)
Sequence Clustering and Redundancy Reduction Results
3Q3A
Cluster # 212 Members. Sequence cutoff: 30% Cluster size: 80 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4OOX 1 A VP1 unp residues 225-530 546987  
2 4RLZ 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 286545  
3 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
4 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
5 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
6 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
7 2ZL7 1 A, B 58 kd capsid protein P-domain 11983  
8 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
9 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 546987  
10 4RDL 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
11 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
12 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
13 4P25 1 A, B, C, D Major capsid protein 1097017  
14 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
15 4RDJ 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
16 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
17 2ZL6 1 A, B 58 kd capsid protein P-domain 11983  
18 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
19 3AST 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
20 4OOV 1 A, B Major capsid protein unp residues 225-530 1182143  
21 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
22 2ZL5 1 A, B 58 kd capsid protein P-domain 11983  
23 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
24 4P1V 1 A, B, C, D P domain of VPI 1097017  
25 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
26 4RDK 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
27 4OOS 1 A VP1 1241973  
28 4P12 1 A, B, C, D Major capsid protein 1097017  
29 3ASQ 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
30 3ASP 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
31 3ASS 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
32 4P3I 1 A, B, C, D P domain of VP1 1097017  
33 4QV2 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
34 4P2N 1 A, B, C, D Major capsid protein UNP residues 226-526 1097017  
35 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
36 3ASR 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
37 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
38 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
39 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
40 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
41 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
42 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983  
43 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
44 3R6K 1 A VP1 protein unp residues 225-525 95340  
45 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
46 4OPV 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
47 4Z4Z 1 A, B Capsid protein residues 224-538 11983  
48 3R6J 1 A VP1 protein unp residues 225-525 95340  
49 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
50 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
51 4Z4U 1 A, B Capsid protein UNP residues 224-538 747305  
52 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
53 4P26 1 A, B, C, D P domain of VP1 1097017  
54 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 1182143  
55 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
56 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 1241973  
57 4X7C 1 A, B VP1 UNP residues 225-530 546980  
58 4RM0 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 286545  
59 3LQ6 1 A, B Capsid protein Protruding (P) Domain, residues 228-540 223997  
60 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
61 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
62 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
63 2OBT 1 A Capsid protein P Domain 142786  
64 3LQE 1 A Capsid protein Protruding (P) Domain, residues 228-540 223997  
65 2OBS 1 A Capsid protein P Domain 142786  
66 4X7D 1 A, B VP1 UNP residues 225-530 1241973  
67 4QVA 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
68 4QVJ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
69 2OBR 1 A Capsid protein P Domain 142786  
70 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
71 3D26 1 A, B 58 kd capsid protein UNP residues 230-530 11983  
72 4QUZ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
73 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
74 3BY2 1 A 58 kd capsid protein UNP residues 218-522 11983  
75 3BY1 1 A 58 kd capsid protein UNP residues 218-530 11983  
76 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
77 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
78 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
79 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
80 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q3A
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 21 689
95% 6 21 957
90% 6 21 983
70% 6 23 964
50% 10 54 264
40% 10 54 288
30% 12 80 212
 

Documentation

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