Sequence Similarity Clusters for the Entities in PDB 3Q3A

Entity #1 | Chains: A,B
Capsid protein protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 25 615
95 % 7 25 858
90 % 7 25 891
70 % 7 32 702
50 % 11 64 259
40 % 13 85 202
30 % 13 91 207

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4OOX 1 A VP1 unp residues 225-530 11983
2 4RLZ 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 11983
3 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
4 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983
5 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983
6 5HZA 1 A, B Capsid protein 11983
7 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
8 2ZL7 1 A, B 58 kd capsid protein P-domain 11983
9 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983
10 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 11983
11 4RDL 1 A, B Capsid Protrusion domain, UNP residues 227-526 11983
12 3Q6R 1 A, B Capsid protein unp residues 225-538 11983
13 3Q3A 1 A, B Capsid protein unp residues 224-538 11983
14 4P25 1 A, B, C, D Major capsid protein 11983
15 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
16 4RDJ 1 A, B Capsid Protrusion domain, UNP residues 227-526 11983
17 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983
18 2ZL6 1 A, B 58 kd capsid protein P-domain 11983
19 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
20 3AST 1 A, B Capsid protein UNP RESIDUES 221-541 11983
21 4RPD 1 A, B Capsid protein P DOMAIN RESIDUES 225-525 11983
22 4OOV 1 A, B Major capsid protein unp residues 225-530 11983
23 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
24 2ZL5 1 A, B 58 kd capsid protein P-domain 11983
25 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
26 4P1V 1 A, B, C, D P domain of VPI 11983
27 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983
28 4RDK 1 A, B Capsid Protrusion domain, UNP residues 227-526 11983
29 5HZB 1 A, B Capsid protein 11983
30 5F4O 1 A, B Capsid protein VP1 P DOMAIN (UNP residues 225-530) 11983
31 4OOS 1 A VP1 11983
32 4P12 1 A, B, C, D Major capsid protein 11983
33 5BSY 1 A, B Capsid protein protruding domain, residues 224-538 11983
34 4RPB 1 A, B, C Capsid protein VP1 P Domain residues 225-532 11983
35 3ASQ 1 A, B Capsid protein UNP RESIDUES 221-541 11983
36 3ASP 1 A, B Capsid protein UNP RESIDUES 221-541 11983
37 3ASS 1 A, B Capsid protein UNP RESIDUES 221-541 11983
38 4P3I 1 A, B, C, D P domain of VP1 11983
39 4QV2 1 A, B VP1 P domain (UNP RESIDUES 225-565) 11983
40 4P2N 1 A, B, C, D Major capsid protein UNP residues 226-526 11983
41 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983
42 3ASR 1 A, B Capsid protein UNP RESIDUES 221-541 11983
43 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
44 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 11983
45 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
46 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
47 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
48 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983
49 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
50 3R6K 1 A VP1 protein unp residues 225-525 11983
51 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 11983
52 4OPV 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 11983
53 4Z4Z 1 A, B Capsid protein residues 224-538 11983
54 5BSX 1 A, B Capsid protein protruding domain, residues 224-538 11983
55 3R6J 1 A VP1 protein unp residues 225-525 11983
56 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 11983
57 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983
58 4Z4U 1 A, B Capsid protein UNP residues 224-538 11983
59 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 11983
60 4P26 1 A, B, C, D P domain of VP1 11983
61 4ROX 1 A, B Capsid protein VP1 P domain residues 225-525 11983
62 5F4J 1 A Protruding domain of GII.17 norovirus capsid P DOMAIN (UNP residues 225-530) 11983
63 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 11983
64 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
65 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 11983
66 4X7C 1 A, B VP1 UNP residues 225-530 11983
67 4RM0 1 A, B Capsid protein Protrusion domain (UNP RESIDUES 220-527) 11983
68 3LQ6 1 A, B Capsid protein Protruding (P) Domain, residues 228-540 11983
69 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
70 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 11983
71 4X7E 1 A, B Capsid protein UNP residues 224-538 11983
72 2OBT 1 A Capsid protein P Domain 142786
73 3LQE 1 A Capsid protein Protruding (P) Domain, residues 228-540 11983
74 2OBS 1 A Capsid protein P Domain 142786
75 5F4M 1 A, B Capsid protein P DOMAIN (UNP residues 225-530) 11983
76 4X7D 1 A, B VP1 UNP residues 225-530 11983
77 4QVA 1 A, B VP1 P domain (UNP RESIDUES 225-565) 11983
78 5E6T 1 A, B Capsid P DOMAIN, UNP residues 225-530 11983
79 4QVJ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 11983
80 2OBR 1 A Capsid protein P Domain 142786
81 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 11983
82 3D26 1 A, B 58 kd capsid protein UNP residues 230-530 11983
83 4QUZ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 11983
84 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
85 3BY2 1 A 58 kd capsid protein UNP residues 218-522 11983
86 3BY1 1 A 58 kd capsid protein UNP residues 218-530 11983
87 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
88 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
89 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 11983
90 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 11983
91 3V7A 3 A, B Capsid P domain residues 224-538 11983