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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (triglycan)
Sequence Clustering and Redundancy Reduction Results
3Q3A
Cluster # 216 Members. Sequence cutoff: 30% Cluster size: 77 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4OOX 1 A VP1 unp residues 225-530 546987  
2 4X06 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
3 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
4 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
5 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
6 2ZL7 1 A, B 58 kd capsid protein P-domain 11983  
7 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
8 4OPO 1 A, B VP1 P domain Saga4 (UNP residues 225-530) 546987  
9 4RDL 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
10 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
11 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
12 4P25 1 A, B, C, D Major capsid protein 1097017  
13 4WZK 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
14 4RDJ 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
15 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
16 2ZL6 1 A, B 58 kd capsid protein P-domain 11983  
17 4X07 1 A, B VP1 P DOMAIN, UNP residues 225-530 546981  
18 3AST 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
19 4OOV 1 A, B Major capsid protein unp residues 225-530 1182143  
20 4WZE 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
21 2ZL5 1 A, B 58 kd capsid protein P-domain 11983  
22 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
23 4P1V 1 A, B, C, D P domain of VPI 1097017  
24 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
25 4RDK 1 A, B Capsid Protrusion domain, UNP residues 227-526 207658  
26 4OOS 1 A VP1 1241973  
27 4P12 1 A, B, C, D Major capsid protein 1097017  
28 3ASQ 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
29 3ASP 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
30 3ASS 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
31 4P3I 1 A, B, C, D P domain of VP1 1097017  
32 4QV2 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
33 4P2N 1 A, B, C, D Major capsid protein UNP residues 226-526 1097017  
34 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
35 3ASR 1 A, B Capsid protein UNP RESIDUES 221-541 95340  
36 4X0C 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
37 4WZL 1 A, B VP1 P DOMAIN (UNP residues 225-530) 546981  
38 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
39 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
40 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
41 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983  
42 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
43 3R6K 1 A VP1 protein unp residues 225-525 95340  
44 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
45 4Z4Z 1 A, B Capsid protein residues 224-538 11983  
46 3R6J 1 A VP1 protein unp residues 225-525 95340  
47 4OPS 1 A, B Major capsid protein P domain Farmington Hills 2004 (residues 225 to 530) 1182143  
48 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
49 4Z4U 1 A, B Capsid protein UNP residues 224-538 747305  
50 4WZT 1 A, B VP1 P DOMAIN, UNP residues 225-530 1241973  
51 4P26 1 A, B, C, D P domain of VP1 1097017  
52 4X05 1 A, B, C, D Major capsid protein P DOMAIN, UNP residues 225-530 1182143  
53 3PVD 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
54 4OP7 1 A, B VP1 P domain NSW0514 (UNP residues 225-530) 1241973  
55 4X7C 1 A, B VP1 UNP residues 225-530 546980  
56 3LQ6 1 A, B Capsid protein Protruding (P) Domain, residues 228-540 223997  
57 3PUN 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
58 3SJP 1 A Capsid Protruding Domain (UNP Residues 221-531) 311380  
59 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
60 2OBT 1 A Capsid protein P Domain 142786  
61 3LQE 1 A Capsid protein Protruding (P) Domain, residues 228-540 223997  
62 2OBS 1 A Capsid protein P Domain 142786  
63 4X7D 1 A, B VP1 UNP residues 225-530 1241973  
64 4QVA 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
65 4QVJ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
66 2OBR 1 A Capsid protein P Domain 142786  
67 3PUM 1 A, B Capsid P DOMAIN, UNP residues 222-537 165510  
68 3D26 1 A, B 58 kd capsid protein UNP residues 230-530 11983  
69 4QUZ 1 A, B VP1 P domain (UNP RESIDUES 225-565) 1160949  
70 3SLD 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
71 3BY2 1 A 58 kd capsid protein UNP residues 218-522 11983  
72 3BY1 1 A 58 kd capsid protein UNP residues 218-530 11983  
73 3SLN 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
74 3SEJ 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
75 3BQJ 1 A va387 polypeptide p polypeptide (residues 225-529) 150080  
76 3SKB 1 A, B, C, D, E, F, G, H, I, J Capsid Protruding Domain (UNP Residues 221-531) 311380  
77 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q3A
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 21 680
95% 6 21 943
90% 6 21 967
70% 6 23 946
50% 9 51 267
40% 9 51 295
30% 11 77 216
 

Documentation

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