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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (triglycan)
Sequence Clustering and Redundancy Reduction Results
3Q3A
Cluster # 681 Members. Sequence cutoff: 100% Cluster size: 21 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3Q39 1 A, B Capsid protein unp reisdues 224-538 11983  
2 3Q38 1 A, B Capsid protein unp reisdues 224-538 11983  
3 3RY8 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
4 3ONU 1 A, B Capsid protein P domain (UNP residues 225-538) 11983  
5 3Q6R 1 A, B Capsid protein unp residues 225-538 11983  
6 3Q3A 1 A, B Capsid protein unp residues 224-538 11983  
7 3Q6Q 1 A, B Capsid protein unp residues 225-538 11983  
8 3PA1 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
9 3PA2 1 A, B Capsid protein P-domain-026 (UNP residues 224 to 538) 11983  
10 4X7F 1 A, B Capsid protein VHH, UNP residues 224-538 11983  
11 4Z4R 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
12 4Z4Y 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
13 4Z4S 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
14 4Z4T 1 A, B Capsid protein UNP residues 224-538 11983  
15 4Z4V 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
16 4Z4W 1 A, B Capsid protein Protruding domain, UNP residues 224-538 747305  
17 4Z4Z 1 A, B Capsid protein residues 224-538 11983  
18 3ONY 1 A, B, C Capsid protein P domain (UNP residues 225-538) 11983  
19 4Z4U 1 A, B Capsid protein UNP residues 224-538 747305  
20 4X7E 1 A, B Capsid protein UNP residues 224-538 11983  
21 3V7A 3 A, B Capsid P domain residues 224-538 150080  
 
Sequence Clusters for the Sequence Entities in PDB 3Q3A
Entity #1: Chains: A,B - Capsid protein protein, length: 319 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 21 681
95% 6 21 946
90% 6 21 970
70% 6 23 954
50% 10 54 261
40% 10 54 284
30% 12 80 212
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.