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An Information Portal to 105025 Biological Macromolecular Structures

Crystal structure of human DNMT1(646-1600) in complex with DNA
Sequence Clustering and Redundancy Reduction Results
3PTA
Sequence Clusters for the Sequence Entities in PDB 3PTA
Entity #1: Chains: A - DNA (cytosine-5)-methyltransferase 1 protein, length: 956 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22847
95% 2 2 19118
90% 2 2 18550
70% 5 5 7188
50% 5 5 6589
40% 5 5 6071
30% 5 5 5424
Entity #2: Chains: B - DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.