Sequence Similarity Clusters for the Entities in PDB 3PTA

Entity #1 | Chains: A
DNA (cytosine-5)-methyltransferase 1 protein, length: 956 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25836
95 % 3 3 21984 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.3
PDBFlex
90 % 3 3 21335
70 % 8 8 6590
50 % 8 8 6146
40 % 8 8 5748
30 % 8 8 5175
Entity #2 | Chains: B
DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures