Sequence Similarity Clusters for the Entities in PDB 3PT6

Entity #1 | Chains: A,B
DNA (cytosine-5)-methyltransferase 1 protein, length: 954 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30948
95 % 4 5 10187 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.6
PDBFlex
90 % 4 5 10063
70 % 6 8 6460
50 % 6 8 6026
40 % 6 8 5641
30 % 6 8 5072
Entity #2 | Chains: C,D
DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J
DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3') dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures