Sequence Similarity Clusters for the Entities in PDB 3PIQ

Entity #1 | Chains: A,C,E,G,H,J
Human monoclonal antibody 2909 Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13607
95 % 2 2 6039 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 2 6040
70 % 2178 2478 2
50 % 4490 5107 1
40 % 5038 5756 1
30 % 6281 7175 1
Entity #2 | Chains: B,D,F,I,K,L
Human monoclonal antibody 2909 Fab light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 11970
95 % 18 19 1253 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 54 61 381
70 % 2212 2519 1
50 % 4491 5107 1
40 % 5039 5756 1
30 % 6282 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures