Sequence Similarity Clusters for the Entities in PDB 3PIQ

Entity #1 | Chains: A,C,E,G,H,J
Human monoclonal antibody 2909 Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12778
95 % 2 2 5769 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 2 5782
70 % 2017 2280 2
50 % 4173 4713 1
40 % 4173 4713 1
30 % 4966 5567 1
Entity #2 | Chains: B,D,F,I,K,L
Human monoclonal antibody 2909 Fab light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12976
95 % 17 18 1202 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 57 63 346
70 % 2058 2327 1
50 % 4174 4713 1
40 % 4174 4713 1
30 % 4967 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.