Sequence Similarity Clusters for the Entities in PDB 3PIQ

Entity #1 | Chains: A,C,E,G,H,J
Human monoclonal antibody 2909 Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13079
95 % 2 2 5896 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 2 5910
70 % 2102 2376 2
50 % 4351 4913 1
40 % 4351 4913 1
30 % 5156 5780 1
Entity #2 | Chains: B,D,F,I,K,L
Human monoclonal antibody 2909 Fab light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 13277
95 % 18 19 1210 Flexibility: Medium
Max RMSD: 9.9, Avg RMSD: 3.6
PDBFlex
90 % 58 64 351
70 % 2146 2426 1
50 % 4352 4913 1
40 % 4352 4913 1
30 % 5157 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures