Sequence Similarity Clusters for the Entities in PDB 3PC8

Entity #1 | Chains: A,B
DNA repair protein XRCC1 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48276
95 % 3 3 13510 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 4 10890
70 % 3 4 10331
50 % 3 4 9348
40 % 3 4 8551
30 % 3 4 7526
Entity #2 | Chains: C,D
DNA ligase 3 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24747
95 % 3 5 10111 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 5 9988
70 % 3 5 9490
50 % 3 5 8584
40 % 3 5 7868
30 % 3 5 6934

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures