Sequence Similarity Clusters for the Entities in PDB 3PC8

Entity #1 | Chains: A,B
DNA repair protein XRCC1 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48901
95 % 3 3 13726 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 4 11070
70 % 3 4 10494
50 % 3 4 9486
40 % 3 4 8671
30 % 3 4 7628
Entity #2 | Chains: C,D
DNA ligase 3 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25122
95 % 3 5 10275 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 5 10149
70 % 3 5 9634
50 % 3 5 8710
40 % 3 5 7977
30 % 3 5 7026

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures