Sequence Similarity Clusters for the Entities in PDB 3PC8

Entity #1 | Chains: A,B
DNA repair protein XRCC1 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47935
95 % 3 3 13414 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 4 10801
70 % 3 4 10252
50 % 3 4 9279
40 % 3 4 8484
30 % 3 4 7472
Entity #2 | Chains: C,D
DNA ligase 3 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24547
95 % 3 5 10037 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 5 9914
70 % 3 5 9423
50 % 3 5 8527
40 % 3 5 7810
30 % 3 5 6882

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures