Sequence Similarity Clusters for the Entities in PDB 3PC8

Entity #1 | Chains: A,B
DNA repair protein XRCC1 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42721
95 % 3 3 13972 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 3 4 11671
70 % 3 4 11033
50 % 3 4 9902
40 % 3 4 8954
30 % 3 4 7723
Entity #2 | Chains: C,D
DNA ligase 3 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14883
95 % 3 5 10387 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 5 10260
70 % 3 5 9773
50 % 3 5 8846
40 % 3 5 8041
30 % 3 5 6959

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures