Sequence Similarity Clusters for the Entities in PDB 3OQM

Entity #1 | Chains: A,C
Catabolite control protein A protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17722
95 % 2 3 11057
90 % 2 3 10912
70 % 3 8 4069
50 % 4 9 2514
40 % 4 9 2490
30 % 30 36 951
Entity #2 | Chains: D,S
Phosphocarrier protein HPr protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10241
95 % 5 8 5774
90 % 5 8 5770
70 % 9 15 2230
50 % 20 33 913
40 % 28 52 645
30 % 28 55 624
Entity #3 | Chains: E
5'-D(*TP*TP*GP*TP*AP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
5'-D(*TP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*TP*AP*CP*AP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.