Sequence Similarity Clusters for the Entities in PDB 3OD8

Entity #1 | Chains: A,B,C,D,E,F,G,H
Poly [ADP-ribose] polymerase 1 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3055
95 % 1 3 3766 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 3 3826
70 % 1 3 3773
50 % 1 3 3655
40 % 1 3 3520
30 % 2 7 2580
Entity #2 | Chains: I,K,M,O
5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: J,L,N,P
5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures