Sequence Similarity Clusters for the Entities in PDB 3OD8

Entity #1 | Chains: A,B,C,D,E,F,G,H
Poly [ADP-ribose] polymerase 1 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 2506
95 % 1 3 3177
90 % 1 3 3225
70 % 1 3 3198
50 % 1 3 3107
40 % 1 3 3010
30 % 2 7 2186
Entity #2 | Chains: I,K,M,O
5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: J,L,N,P
5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.