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Human PARP-1 zinc finger 1 (Zn1) bound to DNA
Sequence Clustering and Redundancy Reduction Results
3OD8
Sequence Clusters for the Sequence Entities in PDB 3OD8
Entity #1: Chains: A,B,C,D,E,F,G,H - Poly [ADP-ribose] polymerase 1 protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 2125
95% 1 3 2688
90% 1 3 2719
70% 1 3 2718
50% 1 3 2709
40% 1 3 2656
30% 2 7 1948
Entity #2: Chains: I,K,M,O - 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3' dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: J,L,N,P - 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' dna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.